F01102

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01102

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01102

Determination of introduced cDNA(s)

RAFL05-21-M20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-M20 - Resource: pda01400

full reading [+] show sequence

ATTGGCCATC GAACACACCA CACAGAGAAA ACAATATGAG CAATCATCAA 
ACTCAGGTGT TGAAGCTATT GGAGCCATGG TGTGAACTTA AAGACAAAGT 
GGTTCTTGTG ACAGGAGCTT CCTCTGGTAT TGGAAGAGAG ATCTGTCTTG 
ATCTTGCCAA AGCTGGTTGC CAGGTTATTG CAGCAGCTCG TCGTGTTGAT 
CGACTCAACT CTCTCTGCTC TGAAATCAAC AGCTTCAGTT CAACTGGAAT 
CCAAGCCGCA GCTCTTGAGT TAGACGTTTC ATCAGACGCA GCCACCATTC 
AAAAAGCGGT CAGGGAAGCT TGGGACATCT TTGGAAAGAT CGATGCATTG 
ATCAACAATG CTGGAATCAG AGGCAATGTC AAGTCGAGTT TGGATTTGTC 
AGAGGACGAA TGGGACAACG TCTTCAAGAC CAACTTAAAG GGTCCTTGGT 
TAGTATCCAA ACATGTTTGT ATGTTAATGC GTGACGCTAA ACGAGGTGGC 
TCGGTGATAA ACATCTCATC GATCGCCGGG ATCCGGGGTA TGTTGCCCGG 
TGGACTTGCT TATGCTTGTT CCAAAGGCGG TGTTGACACC ATGTCAAGGA 
TGATGGCACT TGAGTTAGGT GTTCATAAGA TCAGAGTGAA CTCGATCGCA 
CCGGGGCTTT TCAAGTCAGA GATCACACAA GGTCTTATGC AAAAGGAGTG 
GCTCAAGAAT GTTACCGAGA GGACTGTGCC GTTAAAGGTG CAACAGACCG 
TTGATCCAGG GCTTACTTCT CTGGTTCGCT ATCTCATTCA TGACTCTTCT 
CAATATATAT CCGGGAATAC ATACATTGTT GATTCCGGTG CTACATTGCC 
CGGTGTGCCT ATCTTTTCAT CTCTCTGAAA ATCGAACCTT ATAATATCTT 
ATCTTGTGCA ATAATAAGTG AATACATTTA CCCAAAAAAA AAAAAAAAA

Gene models with high sequence identity

AT3G55290.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	5.7e-63
HMMPfam	Short-chain dehydrogenase/reductase SDR	3.9e-30
superfamily	NAD(P)-binding domain	2.7e-70
HMMPanther	BETA-KETOACYL-ACP REDUCTASE-RELATED	4.8e-187
HMMPanther	Short-chain dehydrogenase/reductase SDR	4.8e-187
PatternScan	Short-chain dehydrogenase/reductase, conserved site	0
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-31
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-31
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-31
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-31
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-31
FPrintScan	Short-chain dehydrogenase/reductase SDR	0.000000000014
FPrintScan	Short-chain dehydrogenase/reductase SDR	0.000000000014
FPrintScan	Short-chain dehydrogenase/reductase SDR	0.000000000014

See the detailed result >

AT3G55290.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55310.1); Has 128769 Blast hits to 128555 proteins in 3647 species: Archae - 1021; Bacteria - 82974; Metazoa - 6760; Fungi - 6996; Plants - 3211; Viruses - 5; Other Eukaryotes - 27802 (source: NCBI BLink).
Link: InterPro Scan - TAIR