F01346

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01346

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01346

Determination of introduced cDNA(s)

  • RAFL05-18-D02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-D02 - Resource: pda07400

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-D02 - full reading 
    ATAATGTTAC TTATCTTCTG ATCTTCCCAA AAAAAGCAAC TAACAATGGT 
    GGAACTTTCG TTCTCTCAGC TCCTTGTCTT ACTTTTAAGC TTACTCTTTC 
    TCTTCACTAC TCTCGCGTCA AGTTCCAAGA CCCCCCGATT CAAGTATTCG 
    TTAGAGAAGC CTCACCACCC ACTTGACCCA CTAACGACAC CTGAAATAAA 
    GAGAGTCCAA ACCATCCTCT CGGGTCATGA TCCGGGTTTC GGGTCCGGGT 
    CAACCATCAT TCACGCCATG GCTCTCGACG AGCCGGATAA GCAACGTGTC 
    ATCCGGTGGA AGAAAGGTGA TCGTCTCCCG CCGCGAAGAG CGGAGATTCT 
    TGCTATGTCT AACGGCGAGA GTCACGTGCT CACGGTGGAT CTTAAATCCG 
    GTCGGGTTGT TTCTGATTTG GTCAACCCGA CTTTTGGATA CCCGATTCTT 
    ACTATGAAGG ATATCATCGC AGTCTCACAG GTTCCTTACA AGAGCGTGGA 
    GTTCAATCGC TCAATCGAAG CGCGTGGGAT TCCGTTCTCC GGTTTGATTT 
    GTATTACACC GTTCGCCGGT TGGTATGGAC CGGACGAAGA AGGACGACGA 
    GTCATAAAGA TCCAATGTTT CTCAAAGCAA GACACTGTCA ATTTCTACAT 
    GAGACCTATC GAAGGACTTT ATTTAACCGT CGATATGGAT AAATTAGAGA 
    TCATCAAGAT TGTAGACAAT GGACCGGTTC CGGTTCCCAA GTCTACCGGT 
    ACGGAATATA GATATGGGTT TCTTAATGAA ACGGTATATA TGGACCGTGT 
    CAACCCAATG TCGATGGAGC AACCGGACGG TCCAAGTTTT CAAGTTGAGG 
    ATGGATACTT GGTTAAGTGG GCGAATTGGA AATTTCATAT TAAACCGGAT 
    CAACGTGCCG GTATGATTAT CTCACAGGCT ACAGTTCGTG ATTCCAAGAC 
    AGGTGAAGCA AGAAGTGTAA TGTACAAAGG TTTTGCGTCG GAGTTGTTCG 
    TACCGAATAT GGATCCAGGG GAAGGTTGGT ATTCAAAAGC TTACATGGAT 
    GCTGGAGAGT TTGGTTTAGG ACCTTCTTCA ATGCCACTTG TGCCACTCAA 
    CGACTGTCCT CGAAACGCTT ACTACATTGA TGGTTTCTTC GCTTCTCCTG 
    AAGGCATTCC AATACTTCAA CCTAACATGA TCTGCTTGTT CGAACGCTAC 
    GCGGGTGACA CTAGCTGGCG ACACTCTGAG ATTCTTCTCC CTGGTGTAGA 
    TATAAGAGAG TCAAGGGCAA AGGTTACACT GGTAGCTAGA ATGGCATGTT 
    CTGTTGGGAA CTATGATTAT ATTTTTGATT GGGAGTTTCA AATGGATGGT 
    GTGATTCGTG TTACGGTCGC GGCCTCGGGG ATGTTGATGG TGAAAGGAAC 
    GGCTTACGAA AACGTTGAAG ACTTGGGTGA GAAAGAGGAT GATTCTGGAC 
    CGTTGATCTC AGAAAACGTT ATAGGAGTCG TCCATGATCA TTTCATATCG 
    TTTCATCTAG ACATGGACAT TGATGGGTCA GCCAACAACT CCTTCGTTAA 
    GGTTCATCTA GAGAAGCAGA GACTTCCACC TGGAGAATCA AGGAGAAAGA 
    GTTACTTGAA GGTCAAGAAA TATGTAGCCA AGACTGAGAA AGATGCTCAG 
    ATCAAGATGA GCCTGTACGA CCCCTACGAG TTCCATCTTG TGAACCCTAA 
    CCGACTTTCT CGGTTAGGGA ACCCGGCTGG TTACAAGCTT GTACCTGGTG 
    GTAATGCTGC AAGTTTGCTC GATCATGATG ATCCACCGCA AATGCGAGGC 
    GCTTTCACAA ACAATCAGAT ATGGGTGACT CGGTATAACC GGTCAGAGCA 
    ATGGGCTGGA GGGCTTTTGA TGTACCAGAG CCGTGGTGAA GACACACTAC 
    AAGTTTGGTC CGACAGAGAT CGGTCCATTG AGAACAAGGA CATAGTGTTG 
    TGGTATACAC TAGGGTTCCA TCACGTACCG TGCCAAGAAG ATTTTCCAGT 
    GATGCCAACA ATAGCATCTA GCTTTGAACT TAAACCGGTC AATTTCTTCG 
    AATCGAACCC GGTACTTGGG ATTTCACCTT TCTTCGAGAA AGACTTACCA 
    GTCTGTTAAA CCAGATGCTT CATCTTATTC GACACTGTGC ATTTTCAAAT 
    GTCATGTGTA GACTTTTCTG ATTATAAATG TTGTGCATAT TCTATTGATA 
    TATGTATATC AGTATATGAA ATCAACATGC TCTTGATATC C

    Gene models with high sequence identity

    1. AT3G43670.1 [+] show detail - Copper amine oxidase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Copper amine oxidase, C-terminal 1.8e-140
    HMMPfam Copper amine oxidase, N3-terminal 4.5e-23
    HMMPfam Copper amine oxidase, N2-terminal 4.5e-22
    PatternScan Copper amine oxidase 0
    HMMPanther COPPER AMINE OXIDASE 0
    HMMPanther Copper amine oxidase 0
    Gene3D Copper amine oxidase, N2/N3-terminal 1.2e-27
    Gene3D Copper amine oxidase, N2/N3-terminal 5.8e-33
    Gene3D Copper amine oxidase, C-terminal 5.7e-135
    superfamily Copper amine oxidase, C-terminal 8.7e-148
    superfamily Copper amine oxidase, N-terminal 3.3e-38
    superfamily Copper amine oxidase, N-terminal 2.4e-21

    See the detailed result >

    AT3G43670.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1555 Blast hits to 1551 proteins in 277 species: Archae - 14; Bacteria - 383; Metazoa - 247; Fungi - 452; Plants - 241; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR