F01809

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01809

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01809

Determination of introduced cDNA(s)

  • RAFL05-16-L13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-L13 - Resource: pda01306

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-L13 - full reading 
    AATGATTCCT TCGTACGCAT CCTCATCTTC TTCTTCTTCT CTCTTCTACT 
    GTATTTAAAC ACTCTCTCGT CTTCTCCTTG GATCCAGAGA GAGACACAAC 
    ACACCATCTC AATCATGTCT TCTTCGTTTC TCTCCTCCAC TGCTTTCTTC 
    CTCCTCCTTT GTCTAGGATT CTGCCACGTG TCCTCTTCCT CCTCCGACCA 
    AGGAACTTAC ATCGTTCACA TGGCTAAATC TCAGATGCCG TCGTCTTTCG 
    ACCTCCACTC TAACTGGTAC GATTCATCTC TCAGATCTAT CTCCGACTCA 
    GCCGAATTGC TCTACACTTA CGAGAACGCG ATTCATGGAT TCTCAACACG 
    GCTAACTCAA GAAGAAGCCG ACTCGCTCAT GACTCAACCT GGTGTTATCT 
    CCGTTTTACC GGAGCACCGT TACGAGCTAC ACACCACTCG TACTCCTCTC 
    TTCCTCGGTC TCGACGAACA CACCGCAGAT CTGTTCCCTG AAGCCGGCTC 
    TTACAGCGAC GTCGTCGTCG GAGTTCTCGA TACCGGAGTT TGGCCCGAGA 
    GTAAAAGCTA CTCCGACGAA GGATTCGGTC CTATTCCTTC CTCCTGGAAA 
    GGCGGATGCG AGGCCGGAAC CAATTTCACC GCTTCTCTCT GTAACCGTAA 
    ACTAATCGGA GCAAGATTCT TCGCTCGTGG TTACGAATCA ACGATGGGAC 
    CAATCGATGA ATCTAAAGAA TCAAGATCTC CTAGAGACGA CGACGGTCAC 
    GGAACTCACA CCTCATCGAC CGCCGCTGGA TCCGTCGTTG AAGGAGCTAG 
    CTTATTAGGC TACGCTTCAG GAACAGCTCG TGGTATGGCT CCACGCGCTC 
    GTGTCGCTGT TTACAAAGTC TGTTGGCTCG GTGGTTGTTT CAGCTCAGAT 
    ATTTTAGCTG CAATCGATAA AGCCATCGCC GATAACGTCA ATGTCCTGTC 
    GATGTCACTC GGCGGTGGAA TGTCGGATTA TTATAGAGAC GGTGTTGCGA 
    TCGGAGCATT CGCCGCCATG GAAAGAGGGA TTTTAGTATC TTGCTCAGCT 
    GGTAATGCTG GTCCGAGTAG TTCTAGTTTA TCAAACGTAG CTCCATGGAT 
    CACAACTGTT GGTGCTGGTA CTTTAGATCG TGATTTTCCG GCGCTTGCGA 
    TTCTCGGTAA CGGCAAGAAT TTCACCGGAG TTTCTTTGTT TAAAGGAGAA 
    GCTTTACCGG ATAAATTGTT GCCGTTTATT TACGCTGGGA ATGCTAGTAA 
    TGCTACTAAT GGTAATCTCT GTATGACCGG AACTTTGATC CCGGAGAAAG 
    TAAAGGGGAA GATTGTGATG TGTGATAGAG GAATTAATGC TAGAGTTCAG 
    AAAGGTGATG TGGTTAAAGC AGCAGGTGGA GTTGGAATGA TTCTGGCTAA 
    CACTGCGGCG AATGGTGAAG AGCTTGTTGC GGATGCTCAT TTGTTACCGG 
    CGACCACCGT TGGTGAAAAA GCCGGTGATA TAATCCGGCA TTACGTGACT 
    ACTGATCCTA ATCCCACCGC TTCGATTTCA ATCTTAGGAA CAGTCGTCGG 
    TGTTAAACCA TCTCCGGTTG TCGCAGCGTT TAGCTCACGT GGACCGAATT 
    CGATTACACC GAATATTCTT AAACCGGATC TGATCGCTCC TGGAGTAAAC 
    ATCCTCGCCG CGTGGACCGG TGCTGCTGGA CCAACCGGAC TCGCTTCCGA 
    TTCTCGCCGC GTGGAGTTCA ATATCATCTC TGGGACGTCG ATGTCTTGCC 
    CTCACGTTAG TGGTTTAGCG GCGCTTCTCA AGTCGGTGCA TCCTGAATGG 
    AGCCCGGCGG CGATTAGATC GGCGCTTATG ACCACCGCTT ACAAAACCTA 
    CAAAGACGGT AAACCGTTAC TCGACATCGC GACAGGGAAG CCTTCGACGC 
    CGTTCGATCA CGGTGCAGGA CACGTGTCAC CAACAACTGC CACTAATCCA 
    GGACTCATCT ACGATCTAAC GACGGAGGAT TACTTAGGCT TCCTCTGCGC 
    ATTGAATTAC ACATCGCCGC AAATTCGAAG TGTCTCGAGA CGTAATTACA 
    CTTGCGATCC GAGTAAATCG TACTCGGTCG CTGATTTGAA CTACCCGTCG 
    TTCGCCGTTA ACGTTGATGG AGTCGGTGCG TATAAGTACA CGCGCACGGT 
    GACGAGCGTG GGAGGAGCTG GGACTTACTC GGTTAAAGTA ACTTCGGAGA 
    CGACAGGAGT CAAGATTTCG GTTGAACCGG CGGTTTTGAA TTTCAAGGAA 
    GCTAACGAGA AAAAATCGTA TACGGTGACG TTTACTGTAG ACTCGTCGAA 
    GCCGTCTGGA TCTAACAGCT TTGGGAGTAT TGAATGGTCG GATGGGAAAC 
    ACGTGGTGGG AAGTCCCGTG GCGATTAGCT GGACATAGTC GTAAATTATG 
    AGAAATGAAA GGGGTTTTAT GGAAAAGAAA AGGTGTTTAC AGATTTATTG 
    TAATGCCGTT TTTAGATACG AAGAAACCTC TGTTTAGCAA AAACGACATG 
    CAGTCTGTTA AGACTTGCCT AGTTTGTTTT TGGGATGTCT TGCTGTTTTT 
    AATTTTAAAA AGAAATATAT TCTCCGGCTA CAACAGTAGC TGGGTCTCTC 
    TCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G67360.1 [+] show detail - Subtilase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Peptidase S8/S53, subtilisin/kexin/sedolisin 9.1e-80
    superfamily Transferrin receptor ectodomain, apical domai 9.2e-08
    superfamily Proteinase inhibitor, propeptide 2.9e-07
    HMMPanther SUBTILISIN-LIKE PROTEASE (PLANT) 0
    HMMPanther Peptidase S8, subtilisin-related 0
    Gene3D Peptidase S8/S53, subtilisin/kexin/sedolisin 6.4e-72
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 2.7e-13
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 2.7e-13
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 2.7e-13
    HMMPfam Peptidase S8/S53, subtilisin/kexin/sedolisin 3.2e-30
    HMMPfam Proteinase inhibitor I9, subtilisin propeptide 1.4e-17
    HMMPfam Protease-associated PA 8.9e-13
    PatternScan Peptidase S8/S53, subtilisin, active site 0

    See the detailed result >

    AT5G67360.1

    Model type
    Protein coding
    Short Description
    Subtilase family protein
    Curator Summary
    Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.
    Computational Description
    ARA12; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, seed coat development, mucilage metabolic process involved seed coat development, mucilage extrusion from seed coat; LOCATED IN: extracellular region, apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT2G05920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR