F02314

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02314

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02314

Determination of introduced cDNA(s)

  • RAFL09-89-B19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-B19 - Resource: pda17893

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-B19 - full reading
    GAAAGTAAAA ACAAAAGGAG AGCAATGGAC TCTGTTTCTT CTTCTTCCTT 
    CCTCTCCTCC ACATTCTCTC TTCATCACTC TCTTCTTCGC CGCCGATCTT
    CCTCTCCTAC TCTCCTCCGT ATCAACTCCG CCGTCGTCGA AGAACGTTCT
    CCAATCACAA ACCCAAGCGA CAACAATGAT CGTCGTAACA AACCCAAAAC
    ACTCCACAAC CGAACCAATC ACACCTTAGT CTCATCACCA CCGAAACTCC
    GACCAGAAAT GACTCTCGCA ACAGCTCTCT TCACCACCGT CGAAGATGTA
    ATCAACACGT TCATCGATCC ACCTTCACGT CCTTCCGTTG ATCCAAAACA
    TGTCCTCTCT GATAACTTCG CTCCTGTCCT CGACGAGCTT CCTCCAACAG
    ACTGTGAAAT CATCCACGGC ACTCTTCCAC TGTCACTTAA CGGCGCTTAC
    ATCCGTAACG GTCCAAATCC ACAGTTTCTC CCTCGTGGTC CTTACCATCT
    CTTCGACGGC GACGGTATGC TTCACGCCAT AAAAATCCAC AACGGTAAAG
    CCACTCTCTG TAGCAGATAC GTCAAGACTT ATAAATACAA CGTCGAGAAA
    CAAACCGGAG CTCCGGTTAT GCCTAACGTG TTTTCCGGAT TCAACGGTGT
    AACGGCGTCA GTAGCTCGTG GAGCTTTAAC GGCAGCTAGG GTTTTAACCG
    GACAGTATAA TCCGGTTAAC GGCATTGGTT TAGCTAATAC AAGTCTAGCT
    TTCTTCAGTA ACCGTCTCTT TGCTTTAGGT GAATCTGATT TACCCTACGC
    CGTCCGATTA ACCGAATCAG GAGATATTGA AACGATCGGA CGGTACGATT
    TCGACGGGAA ATTAGCGATG AGTATGACAG CTCATCCTAA AACCGATCCA
    ATAACCGGAG AAACTTTCGC TTTCCGGTAC GGTCCGGTTC CACCGTTTTT
    AACATATTTC CGGTTTGATT CCGCCGGGAA AAAACAAAGA GACGTTCCGA
    TATTCTCGAT GACGTCTCCG TCGTTTCTCC ATGACTTCGC GATCACGAAA
    CGTCACGCGA TTTTCGCAGA GATTCAGCTT GGCATGAGGA TGAACATGTT
    GGATTTGGTT CTCGAAGGTG GTTCTCCGGT TGGTACTGAT AACGGAAAAA
    CTCCAAGGCT TGGAGTGATT CCTAAGTACG CCGGAGATGA GTCGGAGATG
    AAATGGTTCG AAGTTCCTGG ATTCAATATC ATTCACGCTA TTAATGCTTG
    GGATGAAGAT GATGGAAACA GCGTCGTTTT GATTGCACCG AATATTATGT
    CGATTGAACA TACTTTAGAG AGGATGGATC TGGTTCATGC TTTGGTGGAG
    AAGGTGAAGA TCGATCTCGT CACCGGGATT GTGAGACGTC ATCCGATCTC
    AGCGAGGAAT CTCGATTTCG CTGTGATTAA TCCGGCGTTT CTCGGGAGAT
    GTAGCAGGTA CGTTTACGCG GCGATTGGAG ATCCGATGCC GAAGATCTCC
    GGTGTGGTGA AGCTTGATGT GTCTAAAGGA GATCGGGATG ATTGTACGGT
    GGCCCGTAGA ATGTACGGTT CAGGTTGTTA CGGCGGAGAA CCGTTTTTCG
    TAGCTAGGGA TCCTGGTAAT CCGGAGGCGG AGGAGGATGA TGGTTATGTG
    GTGACGTATG TTCACGATGA AGTGACTGGA GAATCGAAGT TTCTGGTGAT
    GGACGCTAAA TCGCCGGAGC TTGAAATCGT CGCCGCCGTG AGGTTGCCGC
    GAAGGGTTCC GTACGGATTC CATGGGTTAT TTGTCAAGGA AAGTGACCTT
    AATAAGCTTT AACAATATAG GTAACTGCAA TAGTTAATAG AATAATTAAG
    TCTTAATTAC GTCCCGTACA ACAAATCGCA TAGTGTTGTT GCACACTTGC
    ACTTTATACA TTAAACTAAA GTACACATAG TTTGGTGGTG GTCGATGTAT
    ATAAAACATA CCAAAGCTTA TGAATATTAT TTTTTTCTTC TAAAAAAAAA
    A

    Gene models with high sequence identity

    1. AT4G19170.1 [+] show detail - nine-cis-epoxycarotenoid dioxygenase 4
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 9-CIS-EPOXYCAROTENOID DIOXYGENASE 7.6e-192
    HMMPanther Carotenoid oxygenase 7.6e-192
    HMMPfam Carotenoid oxygenase 5.3e-125

    See the detailed result >

    AT4G19170.1

    Model type
    Protein coding
    Short Description
    nine-cis-epoxycarotenoid dioxygenase 4
    Curator Summary
    chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase
    Computational Description
    nine-cis-epoxycarotenoid dioxygenase 4 (NCED4); LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 5 (TAIR:AT1G30100.1); Has 2918 Blast hits to 2864 proteins in 491 species: Archae - 16; Bacteria - 796; Metazoa - 323; Fungi - 173; Plants - 887; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR