F02532

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02532

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02532

Determination of introduced cDNA(s)

RAFL04-15-F10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-F10 - Resource: pda00372

full reading [+] show sequence

TGAAGGGAAA ATCCTAATAA AGGAGAAGAA AAACAGATCT GAAATCCCGC 
TTGATACTCC ACCGACTTTA AACTACTGGT TTTTGTTTGA TTTAAGTATA 
GTGTTAATGA CTCCTCTCTC CACCTTCCTT TGATTCTACC TATCACTTCC 
CTTGCCGTTG CTCCATCTTC ATCACTAGTC ACTATACACC AATCTTAGAT 
CCGGGAAGCT AATTTCTCTT CTCCGATCGG TGAATGCAGT TACATTGACC 
TCGGATCTAA CCAAGCTCTT CTGGTTTCCA GCTCTCTGGA ATTCAAAAAA 
ATGGAGGAGA AATCCAAGTC AAGAGGTTGG TGCGGTTGGT TCATCGCCAT 
TATTGTGCTA GCTTCTGTTA TCCTCGCCGT CGTTTACACT GTTAAATTGA 
GAACGAAGAA ATCCGGTGAC GATGACGGTG GCGGTCCCGT TCCTGGACCT 
CCCGGCGCCA TTGATAAGAA ATACGCCGAC GCTCTTAAGC TCGCTTTGCA 
GTTCTTCGAT ATCCAGAAAT CTGGTAAATT GGAGAACAAT AAGATACCTT 
GGAGAGGAGA TTCAGGTCTT AAAGATGGAA GTGAAGATAA TCTGGATCTT 
TCCAAAGGCT TATATGATGC TGGAGATCAT ATAAAGTTTG GTTTTCCAAT 
GGCTTTCACT GCTACAGTTT TGTCATGGTC GATTCTTGAG TATGGTGATC 
AAATGAATGC AGTGAACCAA TTGGATCCTG CTAAAGACTC TCTCCGGTGG 
ATCACTGACT ATCTTATCAA AGCTCATCCT TCTGACAATG TCCTCTATAT 
CCAGGTGGGA GATCCAAAAG TAGATCATCC ATGCTGGGAG AGACCAGAGG 
ATATGAAAGA GAAGAGACCA CTTACTAAAA TTGATGTAGA TACTCCAGGG 
ACAGAGGTTG CTGCTGAAAC TGCTGCAGCT ATGGCTTCAG CGTCTTTGGT 
GTTTAAGGAT AGTGATCCTA CATATTCAGC AACGCTTCTG AAACATGCGA 
AGCAGTTGTT TAATTTTGCA GATACAAAGA GAGGCTCTTA CAGTGTTAAC 
ATACCTGAGG TTCAGAAGTT TTACAATTCG ACTGGATATG GTGATGAGCT 
ACTATGGGCA GCTAGTTGGT TGTATCATGC AACAGAGGAT AAAACTTACC 
TTGATTATGT GTCTAATCAT GGAAAAGAAT TTGCTAGTTT TGGAAATCCT 
ACTTGGTTTA GTTGGGACAA CAAGCTTGCA GGAACACAGG TACTATTATC 
AAGATTACTC TTCTTTAAGA AAGATTTATC AGGAAGCAAG GGACTTGGAA 
ATTACAGGAA CACAGCTAAA GCTGTCATGT GTGGACTTCT ACCAAAGTCT 
CCAACATCTA CAGCTAGTAG AACAAACGGT GGTCTTATAT GGGTTAGTGA 
ATGGAACTCG ATGCAACAAT CCGTTTCGTC AGCGTTTTTA GCCTCGCTTT 
TCAGTGATTA CATGCTCACT TCCCGTATCC ATAAAATATC TTGCGACGGG 
AAAATCTTCA AAGCAACAGA GCTTAGAGAT TTCGCCAAAT CGCAGGCTGA 
TTACATGCTG GGGAAGAATC CGTTGGGAAC GAGCTTCGTG GTGGGTTATG 
GAGACAAATA CCCACAATTT GTGCATCATA GAGGAGCTTC GATCCCGGCA 
GATGCAACAA CGGGTTGCTT AGATGGATTC AAATGGTTTA ACTCGACGAA 
ACCAAACCCA AACATAGCAT ATGGTGCACT CGTAGGTGGA CCTTTCTTCA 
ATGAGACGTT CACTGACTCA CGAGAGAACC CAATGCAGAA CGAGCCAACC 
ACTTACAACA ATGCACTCCT CGTTGGTCTC TTGTCTAGTC TTGTCACTAC 
ATCTTCTACT TTACAGTCGT TGAAGTGAGC TTTGCGTGTT TTAGCCTTCT 
TATTGAAAAT CACATTGCTT CATTTTTATT TGTAATTTTT TAAAAAAAAT 
CGTGGGTGTG TGTGTATTCA CGTTGTGTAT TGCTTGATAT GTTGATGCGT 
GTAACCAAAA AAAAAAAAAA AA

Gene models with high sequence identity

AT1G75680.1 [+] show detail - glycosyl hydrolase 9B7
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycoside hydrolase, family 9	1.9e-151
Gene3D	Six-hairpin glycosidase	1.6e-155
superfamily	Six-hairpin glycosidase-like	2.7e-163
PatternScan	Glycoside hydrolase, family 9, active site	0
HMMPanther	Glycoside hydrolase, family 9	5e-228
HMMPanther	ENDO-1,4-BETA-GLUCANASE	5e-228

See the detailed result >

AT1G75680.1

Model type: Protein coding
Short Description: glycosyl hydrolase 9B7
Computational Description: glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B5 (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link: InterPro Scan - TAIR