F03539

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03539

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03539

Determination of introduced cDNA(s)

RAFL04-15-D02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-D02 - Resource: pda00537

full reading [+] show sequence

AACACCACTA ATAAACTCAA CATGGCTAGA TCCTTGTTGC TCTCGCTAAC 
CCTCACATTC CTCTTCGCCG GAATTGTCTC AGCTCGTGAC TGGAACATCC 
TGAGCCAGCT CAAAGGAACC ACAACCACCA CGAAGACTAG CCAAACCGGC 
GTCACATCTT TGAAAGCTCC CAACCTAAAC GGATACTGTG AGAGCTGGAG 
AGTCAACGTG GAGCTTAACA ACATAAGGGA CTTTAAGGTG GTTCCACAGG 
AATGTGTATG GTTCGTCCAA AAGTACATGA CCTCATCTCA ATACGAAGAT 
GACGTGGAGA GAGCCGTCGA TGAAGCCATC CTCTACCTCG GAAAAACTTG 
TTGCGAGAAG AAGACATGCG ATGGCATGGA TGCTTGGATC TTTGACATTG 
ATGACACTCT TCTCTCAACC ATTCCTTACC ACAAGAGCAA CGGTTGTTTC 
GGTGGTGAGC AACTGAACAC GACCAAGTTC GAGGAATGGC AAAATTCGGG 
CAAGGCACCA GCGGTTCCAC ACATGGTGAA GTTGTACCAT GAGATCAGAG 
AGAGAGGTTT CAAGATCTTT TTGATCTCTT CTCGTAAAGA GTATCTCAGA 
TCTGCCACCG TCGAAAATCT TATTGAAGCC GGTTACCACA GCTGGTCTAA 
CCTCCTTCTG AGGGGAGAAG ATGATGAAAA GAAGAGTGTG AGCCAATACA 
AAGCAGATTT GAGGACATGG CTTACAAGTC TTGGGTACAG AGTTTGGGGA 
GTGATGGGTG CACAATGGAA CAGCTTCTCT GGTTGTCCAG TTCCCAAGAG 
AACCTTCAAG CTCCCTAACT CCATCTACTA TGTCGCCTGA TTAAATCTTA 
TTTACTAACA AAACAATAAG ATCAGAGTTT CATTCTGATT CTTGAGTCTT 
TTTTTTCTCT CTCCCTCTTT TCATTTCTGG TTTATATAAC CAATTCAAAT 
GCTTATGATC CATGCATGAA CCATGATCAT CTTTGTGTTT TTTTTTCCTT 
CTGTATTACC ATTTTGGGCC TTTGTGAAAT TGATTTTGGG CTTTTGCTAA 
AAAAAAAAAA AAAA

Gene models with high sequence identity

AT5G44020.1 [+] show detail - HAD superfamily, subfamily IIIB acid phosphatase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	HAD-like	2.1e-19
HMMPIR	Vegetative storage protein/acid phosphatase	2.6e-155
HMMTigr	Acid phosphatase, plant	1.1e-133
HMMPfam	Acid phosphatase (Class B)	2.3e-72

See the detailed result >

AT5G44020.1

Model type: Protein coding
Short Description: HAD superfamily, subfamily IIIB acid phosphatase
Computational Description: HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT1G04040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR