F04248

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04248

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04248

Determination of introduced cDNA(s)

  • RAFL09-07-A09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-A09 - Resource: pda17617

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-A09 - full reading 
    GATAATAACA ACAACTTCTC TTCTTTACTC GTTTCTCTCT CTCTCTTTTC 
    TTTTCTTTTC TTCAAGCGCT TCTTTAATGG CGGCTGTTCA ATGTCTCACT 
    TTCCTCTTCT TGTTTCTTCT CCAAAACGCG ACGTCAGCTT CACCTCTCCC 
    TCTCTTCCGG CGGCCGATCC AAAGCAACCA CAGCAACTTC GTGAAGCATC 
    CTCGCCGAAG TCAGGTGGTT TTCCCGGTGA ATCATAGTAG TTGTGATCTG 
    TTCGCCGGCG AGTGGGTGCG GGATGAGACT TACCCACTTT ACCGGTCTAA 
    AGAATGCGGC CGAGGAATCA TAGATCCGGG ATTCGACTGC CAGACTTACG 
    GCAGACCTGA CTCCGACTAT CTCAAGTTCC GGTGGAAACC TTTCAACTGC 
    AATGTCCCTA GATTCAATGG AGTGAAGTTT CTACAAGAAA TGAGAGACAA 
    AACCATAATG TTCGTTGGTG ATTCGTTGGG TAGAAACCAA TGGGAGTCGT 
    TGATATGTAT GATCTCTTCA TCAGCACCGT CCATTAATAC TCACATCATT 
    CATGAAGATC CTCTCTCTAC CTTCAAGATC CTTGACTACA ACGTGAAGGT 
    ATCATTCTAT AGAGCTCCTT ATCTTGTAGA CATCGACAAA ATTAACGGAA 
    AGACAACTCT TAAACTCGAC GAAATCTCTG TGGATGCATC GAATGCTTGG 
    CGCACAGCCG ACGTTCTATT GTTCAACACT GGTCACTGGT GGAGCCACAC 
    AGGTTCTTTA CGAGGGTGGG AGCAGATGGA GACAGGTGGG AGATATTACG 
    GCGACATGGA TAGGTTAGTG GCGTTGAGAA AAGGACTAGG AACGTGGTCT 
    AGTTGGGTCC TTCGTTATAT CAATTCTCCT CTCACTAGAG TTTTCTTCCT 
    CTCGGTCTCA CCCACACACT ACAACCCAAA TGAGTGGACT TCAAGATCAA 
    AAACTTCAAC AATAACTCAA GGAGGTAAAA GCTGCTACGG ACAAACGACA 
    CCGTTTAGTG GAACAACGTA TCCAACAAGT TCATACGTGA ACCAGAAGAA 
    AGTGATAGAC GACGTGGTTA AAGAGATGAA GTCTCATGTC TCATTGATGG 
    ATATAACTAT GCTCTCTGCT CTTCGTGTCG ACGGTCATCC TTCGATATAT 
    AGTGGAGATC TCAACCCTTC TTTGAAAAGA AATCCTGACC GTTCATCTGA 
    TTGTAGCCAT TGGTGTCTTC CGGGTCTTCC CGACACTTGG AACTAATTGT 
    TTTATGCTGC TTTGTTGTAC TGAAGATTTG ATTAACCAAG ATCAAACAAA 
    ATGTATCTAT TGAATTATAT AGTTTCCTAA TTTTTATTTG TAAGTTCACT 
    AAGTTGTTAC GTTTAATCAA ACATATAATT GTGAAGTTGA GGATCTTGTT 
    ACGTTTAATC AAAAAAAAAA

    Gene models with high sequence identity

    1. AT2G30010.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 45
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    See the detailed result >

    AT2G30010.1

    Model type
    Protein coding
    Short Description
    TRICHOME BIREFRINGENCE-LIKE 45
    Curator Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    TRICHOME BIREFRINGENCE-LIKE 45 (TBL45); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G58600.1); Has 1337 Blast hits to 1318 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR