F04402

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04402

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F04402

Determination of introduced cDNA(s)

  • RAFL08-18-C01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-18-C01 - Resource: pda04966

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-18-C01 - full reading 
    AATAATCTTC TCCGAATTCG ACGGAGAGAT TTGGTGAAGA CGATGGAGAT 
    GCAAGAGGCT AATCAAGGAG GAGGATCGGA GGTTTCTCCG AATCAGACGA 
    TTTACATCAA CAATCTCAAC GAAAAAGTGA AGCTTGATGA GCTGAAGAAA 
    TCGCTGAATG CAGTGTTCTC TCAGTTCGGG AAGATACTGG AGATATTGGC 
    GTTTAAGACC TTTAAGCACA AAGGACAAGC TTGGGTAGTC TTCGACAACA 
    CCGAGTCTGC TTCCACTGCT ATTGCTAAAA TGAATAATTT TCCTTTCTAC 
    GACAAGGAGA TGAGAATACA ATATGCCAAA ACAAAATCAG ATGTTGTTGC 
    CAAGGCCGAT GGTACATTTG TTCCTCGCGA GAAGAGAAAG AGACATGAGG 
    AGAAAGGAGG CGGCAAGAAA AAGAAAGACC AGCACCATGA TTCTACACAG 
    ATGGGCATGC CCATGAACTC AGCATATCCA GGTGTCTATG GAGCTGCACC 
    TCCTCTATCG CAAGTACCAT ACCCTGGTGG TATGAAACCC AATATGCCCG 
    AGGCACCAGC TCCGCCAAAT AATATTCTCT TTGTCCAAAA CCTTCCTCAC 
    GAGACAACTC CAATGGTGCT TCAGATGTTG TTCTGCCAGT ACCAAGGATT 
    TAAGGAAGTT AGAATGATTG AAGCCAAACC GGGAATCGCC TTTGTGGAGT 
    TTGCTGATGA GATGCAGTCG ACGGTCGCAA TGCAGGGACT TCAAGGTTTC 
    AAGATTCAGC AAAACCAGAT GCTCATCACG TATGCCAAGA AATAGACAAT 
    TTCGTTTTAT TTGTGTTTCG ATGAGATATG TTTGTATCTG TCAATGTTAC 
    TTCTTCCATG GTTTGCGCAA GAAGGAAACT TGTCTTTCTT GTGTGTTTGT 
    TGTAGAATTG CTTAGAATAT TACACAATCA TCTAACTTAC AACT

    Gene models with high sequence identity

    1. AT2G47580.1 [+] show detail - spliceosomal protein U1A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 1.5e-10
    HMMPfam RNA recognition motif, RNP-1 1.4e-12
    superfamily RNA-binding domain, RBD 4.4e-22
    superfamily RNA-binding domain, RBD 8.2e-18
    HMMSmart RNA recognition motif, RNP-1 4.7e-13
    HMMSmart RNA recognition motif, RNP-1 2e-11
    HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN U1A,U2B 1.3e-109
    ProfileScan RNA recognition motif, RNP-1 14.88
    ProfileScan RNA recognition motif, RNP-1 13.089
    Gene3D Nucleotide-binding, alpha-beta plait 2.1e-29
    Gene3D Nucleotide-binding, alpha-beta plait 6.3e-28

    See the detailed result >

    AT2G47580.1

    Model type
    Protein coding
    Short Description
    spliceosomal protein U1A
    Curator Summary
    encodes spliceosomal protein U1A
    Computational Description
    spliceosomal protein U1A (U1A); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to salt stress, nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleolus, nucleus, U1 snRNP; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 2473 Blast hits to 2417 proteins in 290 species: Archae - 0; Bacteria - 37; Metazoa - 1259; Fungi - 517; Plants - 407; Viruses - 1; Other Eukaryotes - 252 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR