F05305

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05305

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05305

Determination of introduced cDNA(s)

  • RAFL06-77-B13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-77-B13 - Resource: pda03657

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-77-B13 - full reading 
    GGAGAGAAAG ATCGAATCGA AGAATGGCAG AATTCGTTGA AGCTGATAAC 
    GCAGAAGCAA TAATCGCGAG GATCGAAACC AAATCGAGGA AGATTGAAAG 
    CCTACTCAAA CAGTACAAAC ATGTAGAAGC TTTGAAAACG GCTCTTGAAG 
    GTTCGCCTCC GAAAACTCGC GATGAACGTT GCAAGTCGGC TAATTGGATA 
    GTTGTGCACA GAGCTTTAAT GGCCATTAAG GATATTGACG GAATGCTCAA 
    TGCTCTTGAT GTCGAATATT ACGACATTCT CATGAAGTAC TTGTACAGAG 
    GACTTTCTAC TGGGGACCGA CCCACCTGCG ATCAGTGCCT GAAGATTCAC 
    GAGAAACTCA CTGAGAGAGC TGGTCTCGGT TGCATTCTCC GATGTCTTAC 
    TGATACCATC AACACCGTTT GATCCATCAT TCCCTCTTAT GTATTATTAC 
    TTGATGCCTT GATGTTTCCA ATGTGCATAT TCTCCTTGAG GAACCATGTC 
    TCACATTTAT CAGTTT

    Gene models with high sequence identity

    1. AT4G01710.1 [+] show detail - ARP2/3 complex 16 kDa subunit (p16-Arc)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ARP2/3 complex 16kDa subunit (p16-Arc) 5.9e-43
    Gene3D ARP2/3 complex 16kDa subunit (p16-Arc) 5.3e-29
    Coil coiled-coil 0
    superfamily ARP2/3 complex 16kDa subunit (p16-Arc) 5.8e-36
    HMMPfam ARP2/3 complex 16kDa subunit (p16-Arc) 3.5e-36

    See the detailed result >

    AT4G01710.1

    Model type
    Protein coding
    Short Description
    ARP2/3 complex 16 kDa subunit (p16-Arc)
    Curator Summary
    belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome.
    Computational Description
    CROOKED (CRK); CONTAINS InterPro DOMAIN/s: ARP2/3 complex 16kDa subunit (p16-Arc) (InterPro:IPR006789); BEST Arabidopsis thaliana protein match is: ARP2/3 complex 16 kDa subunit (p16-Arc) (TAIR:AT5G65274.1); Has 360 Blast hits to 360 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 50; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR