F05342

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05342

Determination of introduced cDNA(s)

  • RAFL05-08-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-M19 - Resource: pda07259

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-M19 - full reading
    GTGGGAACGA AGTAGACTTA AACTATTCAG GAAAAAAAAA ATTCTCTATT 
    ATTGAACAAA GTAGACTTAA AAAAAACATT TCAATCAGAT GGAGAAAGCT
    TGTGGTGATG ATAGGTCCCG CTTACTCAGG AAGATTTCAA CGGAAAGCAA
    GGTAATAGTC TAGACTCTAG AATGGATCTT CTTCAGCTGC TCCTAGATTG
    ACGATCTCAT ACTCGCATAT CCAGAAACCA TCCTACTCTC CCTTTGATTT
    TGATCCTCGG TGCTTTAGCC GTTCGAGAAA GAGAGCAATT TTCACTTCCG
    GCCTCGTATT CTTCGGGATC TCGGACTCAA TCATCGGGAA CAAGGCGACT
    TCCGCCGACT GATGAAGAAC GAGTCTCGGA CATCTGAAGA AATCAGGTAA
    ATCGGAGGAT GTT

    Gene models with high sequence identity

    1. AT4G03500.1 [+] show detail - Ankyrin repeat family protein
      E-value: 0; Score: 99.75

     

    InterPro Scan Digest

    See the detailed result >

    AT4G03500.1

    Model type
    Protein coding
    Short Description
    Ankyrin repeat family protein
    Computational Description
    Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03460.1); Has 38634 Blast hits to 17459 proteins in 653 species: Archae - 49; Bacteria - 2374; Metazoa - 20314; Fungi - 3164; Plants - 3215; Viruses - 213; Other Eukaryotes - 9305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR