F05423

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05423

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05423

Determination of introduced cDNA(s)

  • RAFL04-16-D14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-D14 - Resource: pda00601

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-D14 - full reading 
    AGACAAATCA GAAGAGAGAG ATTTAGATAT TGTAGAGTGA GATTCTAAAG 
    AGAGAGAGAG AGAGAGATAT GGCTAGTGGA ATCGCTCGTG GTCGTTTAGC 
    TGAAGAGAGG AAATCGTGGA GGAAGAATCA TCCTCATGGT TTTGTGGCAA 
    AGCCGGAGAC GGGGCAGGAT GGAACTGTGA ATCTAATGGT GTGGCATTGC 
    ACTATACCTG GTAAAGCTGG GACTGATTGG GAAGGTGGAT TCTTTCCATT 
    AACGATGCAC TTCAGTGAGG ATTATCCGAG CAAACCTCCG AAATGTAAAT 
    TTCCACAAGG GTTTTTCCAC CCTAATGTCT ATCCATCTGG AACTGTCTGT 
    CTCTCTATCC TTAACGAGGA TTATGGATGG AGACCAGCCA TCACCGTGAA 
    GCAGATTCTT GTTGGTATTC AGGATTTACT TGACACACCG AATCCCGCTG 
    ACCCTGCACA GACAGATGGT TATCATCTCT TCTGTCAGGA TCCAGTTGAG 
    TACAAGAAAA GGGTGAAGCT GCAGTCCAAG CAGTATCCTG CTCTTGTCTA 
    AAACCTCAAA AAAGAGAACG CACCAAAACT GATGACAAGC TCTGAATATT 
    TTCTCGTCTT GTGTCATTAT GTTTAGATGT CATTGGGTGA TTGAAAACTC 
    CTCATTTTGG CACCTTAAGA CACTGGAATC TATTTATTTT CGAAAAAAAA 
    CTCTTCTTTC TCTATTTAAC TGTTAATATT CTTGG

    Gene models with high sequence identity

    1. AT3G57870.1 [+] show detail - sumo conjugation enzyme 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-conjugating enzyme/RWD-like 3.9e-51
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    HMMSmart Ubiquitin-conjugating enzyme, E2 1.4e-67
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 I 6.9e-105
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6.9e-105
    HMMPfam Ubiquitin-conjugating enzyme, E2 1.1e-44
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1.7e-48
    ProfileScan Ubiquitin-conjugating enzyme, E2 35.839

    See the detailed result >

    AT3G57870.1

    Model type
    Protein coding
    Short Description
    sumo conjugation enzyme 1
    Curator Summary
    Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.
    Computational Description
    sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR