F05503

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05503

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F05503

Determination of introduced cDNA(s)

  • RAFL06-87-I09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-I09 - Resource: pda07756

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-I09 - full reading 
    GTTGTGGTGT GTTGGAAGAT GTGAATCGCC TCTACTAGGG TTCGATTCCA 
    ACATAAAATT GTACTTTTGG AAGATACAGA GAAAGAGATG GGCAAATCTC 
    AGATTCTTCT AAACGCTGAG AGCTTTACTT GTTCTTCTTT CAATACTTTC 
    TTCACTTTAT GGATCTTCTT TACTCTTCAC TCCTTTCCAT TTCAAGCTCA 
    AGCTGCTCCT TCTGGTTCCT TGATTAAGCA CATGTCATCG GTTCTCAAGT 
    GGACTACTGG ATCATCCTCT AAATTATCCC AATCAGACAC TAATGTTCTT 
    CAGTTTGAGA ATGGTTACTT GGTCGAAACT GTTGTGGAAG GAAACGATAT 
    TGGTGTTGTT CCTTACAAGA TTCGAGTTTC TGATGATGGA GAACTTTATG 
    CTGTTGATGA ACTTAATAGC AACATCATGA AAATCACTCC TCCCTTGTCT 
    CAGTACAGCA GGGGAAGATT GGTGGCTGGA TCTTTTCAAG GAAAAACAGG 
    GCATGCAGAT GGAAAACCGA GTGAGGCTCG TTTTAACCAT CCGAGAGGCG 
    TTACAATGGA TGACAAAGGG AACGTTTATG TCGCTGATAC TTTGAATCTC 
    GCCATCCGAA AGATTGGTGA TTCAGGTGTT ACTACGATAG CTGGGGGAAA 
    ATCAAATATA GCTGGGTATA GAGATGGGCC AAGTGAGGAT GCAAAGTTCT 
    CAAATGATTT TGATGTCGTA TATGTTCGGC CTACCTGCTC GTTGCTGGTC 
    ATCGATAGAG GAAATGCGGC TCTTCGCCAA ATCTCTCTCA GTGAAGAGGA 
    CTGTGACTAT CAAGATGATA GCTCAATCTC TCTAACTGAT ATACTCTTGG 
    TTATTGGTGC TGTTCTCATT GGTTATGCTA CTTGTATGCT CCAGCAGGGC 
    TTTGGAAATT CTTTCTTCTC AAAGACGGTA GGATCAGAAA CCAGCTATGA 
    AGAAGAGCAT CCAGGAAAAG AGAAACTCTC CCGGCCTGTC CATGAGAAAA 
    CAATAACCAA GGAAGAACCT GGTTGGCCAT CATTTGGGCA ACTCCTTACT 
    GATCTCTGCA AACTTGCTCT CGAGTTTATA ACCAGCCACC TAGTTCCAGC 
    CCGATTCCAA ACCAACCCCA ATCTAAGGCC ATTAAAAGAT AGACTCATAA 
    TGCCTGAAGA CGAACAAGAA CCACCTCGAG TCCAAAGGCA TACTGCCCCA 
    GCACCAATCT CAGAATCCCG ACATGCTCAC TTACCTAAAG CTGATGATAG 
    TTACCCTGAA CATAAGACGC CAAAGCTAAG ATCAAGTAGT GTAATGAAGG 
    ACCCTACTTT GTCATCATCC AAGCACCATC GGACATCATC AAAACGGCAG 
    GACTATGCTC AGTTCTATGC CTCGGGAGAG GTTGCCCAAC CGAAGATCCA 
    TAAAGAGCGG TCAAGGCGTC GTCATAGAGA TAAAACAACC GAGACAGAAC 
    CAAAGCCAAC ACCATCAGAT ACGGTGAAGC CTGTGGAGTA CAGTAATAGT 
    TCAAAGTTTG ATCATTACAA CATGAGGAGC AGCAAGTATG GACCTGAAAC 
    TCCATTTCGA TTCTAGAAAG TAAAATCACA TACTCATTAG AACCCTTTTC 
    TGAGTATGTT GTGCCCTTTC TTTTGTCCTT GGTTTGAGGA GATTCCTTAT 
    GTTTTCTTTT TGTTAGTTAC TAAGAAAATC TTATTACACA GATGATGAAA 
    AAGAGGTTAA AGGCTTTTCT TGTAACGAAG GATTGATGAA TCATGACTGA 
    AAATCTGATG TATTATGAAC TTATACGATC

    Gene models with high sequence identity

    1. AT3G14860.1 [+] show detail - NHL domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NHL repeat 1.3e-05
    Gene3D Six-bladed beta-propeller, TolB-like 1.2e-05
    superfamily NHL repeat 2e-06

    See the detailed result >

    AT3G14860.1

    Model type
    Protein coding
    Short Description
    NHL domain-containing protein
    Computational Description
    NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G70280.2); Has 2752 Blast hits to 1249 proteins in 210 species: Archae - 76; Bacteria - 1297; Metazoa - 50; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 1116 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR