F05513

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05513

Determination of introduced cDNA(s)

RAFL05-04-N11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-N11 - Resource: pda02449

full reading [+] show sequence

AAAACTCTCC GACGATGCCT CAGGCACCGA TGCCAGAGTT CTCTAGCTCG 
GTGAAGCTCA AGTACGTGAA ACTTGGTTAC CAATATTTGG TTAACCATTT 
CTTGAGTTTT CTTTTGATCC CGATCATGGC TATTGTCGCC GTTGAGCTTC 
TTCGGATGGG TCCTGAAGAG ATCCTTAATG TTTGGAATTC ACTCCAGTTT 
GACCTAGTTC AGGTTCTATG TTCTTCCTTC TTAGTCATCT TCATCTCCAC 
TGTTTACTTC ATGTCCAAGC CACGCACCAT CTACCTCGTT GACTATTCTT 
GTTACAAGCC ACCTGTCACG TGTCGTGTCC CCTTCGCAAC TTTCATGGAA 
CACTCTCGTT TGATCCTCAA GGACAAGCCT AAGAGCGTCG AGTTCCAAAT 
GAGAATCCTT GAACGTTCTG GCCTCGGTGA GGAGACTTGT CTCCCTCCGG 
CTATTCATTA TATTCCTCCC ACACCAACCA TGGACGCGGC TAGAAGCGAG 
GCTCAGATGG TTATCTTCGA GGCCATGGAC GATCTTTTCA AGAAAACCGG 
TCTTAAACCT AAAGACGTCG ACATCCTTAT CGTCAACTGC TCTCTTTTCT 
CTCCCACACC ATCGCTCTCA GCTATGGTCA TCAACAAATA TAAGCTTAGG 
AGTAATATCA AGAGCTTCAA TCTTTCGGGG ATGGGCTGCA GCGCGGGCCT 
GATCTCAGTT GATCTAGCCC GCGACTTGCT CCAAGTTCAT CCCAATTCAA 
ATGCAATCAT CGTCAGCACG GAGATCATAA CGCCTAATTA CTATCAAGGC 
AACGAGAGAG CCATGTTGTT ACCCAATTGT CTCTTCCGCA TGGGTGCGGC 
AGCCATACAC ATGTCAAACC GCCGGTCTGA CCGGTGGCGA GCCAAATACA 
AGCTTTCCCA CCTCGTCCGG ACACACCGTG GCGCTGACGA CAAGTCTTTC 
TACTGTGTCT ACGAACAGGA AGACAAAGAA GGACACGTTG GCATCAACTT 
GTCCAAAGAT CTCATGGCCA TCGCCGGTGA AGCCCTCAAG GCAAACATCA 
CCACAATAGG TCCTTTGGTC CTACCGGCGT CAGAACAACT TCTCTTCCTC 
ACGTCCCTAA TCGGACGTAA AATCTTCAAC CCGAAATGGA AACCATACAT 
ACCGGATTTC AAGCTGGCCT TCGAACACTT TTGCATTCAC GCAGGAGGCA 
GAGCGGTGAT CGACGAGCTC CAAAAGAATC TACAACTATC AGGAGAACAC 
GTTGAGGCCT CAAGAATGAC ACTACATCGT TTTGGTAACA CGTCATCTTC 
ATCGTTATGG TACGAGCTTA GCTACATCGA GTCTAAAGGG AGAATGAGGA 
GAGGCGATCG CGTTTGGCAA ATCGCGTTTG GGAGTGGTTT CAAGTGTAAC 
TCTGCCGTGT GGAAATGTAA CCGTACGATT AAGACACCTA AGGACGGACC 
ATGGTCCGAT TGTATCGACC GTTACCCTGT CTTTATTCCC GAAGTTGTCA 
AACTCTAAAC TGAAAACGTC TTTGAACGGT TTAGTAACGG TTTGATTTTG 
TGTTACGGTT TAGGTTTATT TGGTCTCGGG ATTTGGTTTA AAGGGGATTG 
AGAAATGGGA AGTTAGAGAG AAGAAAAAGC AAAGCATAAA TGTTTGTATT 
TAATTGCTCT GCATATACTT AAATCTCTGC TTTTCATTTG GGGTATTTTT 
TAGTTTCTCG TGCTGTAATT AATAACTTGT GGTGTACTCA AATAAGAATA 
TTTCTCTCTG TTTTATTATT TTTAAATTGG AGAATAAACT TCTTTGTTTT 
AAAAAAAAAA AAAAT

Gene models with high sequence identity

AT1G68530.1 [+] show detail - 3-ketoacyl-CoA synthase 6
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMPfam	FAE1/Type III polyketide synthase-like protein	4.8e-137
HMMPfam	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	2.9e-12
HMMPIR	Very-long-chain 3-ketoacyl-CoA synthase	0
Gene3D	Thiolase-like, subgroup	3.3e-54
Gene3D	Thiolase-like, subgroup	3.5e-24
superfamily	Thiolase-like	2.4e-94

See the detailed result >

AT1G68530.1

Model type: Protein coding
Short Description: 3-ketoacyl-CoA synthase 6
Curator Summary: Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description: 3-ketoacyl-CoA synthase 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 5 (TAIR:AT1G25450.1); Has 4523 Blast hits to 4503 proteins in 1079 species: Archae - 0; Bacteria - 1483; Metazoa - 0; Fungi - 25; Plants - 2866; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Link: InterPro Scan - TAIR