F05833

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05833

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05833

Determination of introduced cDNA(s)

  • RAFL06-68-G04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-G04 - Resource: pda03294

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-G04 - full reading
    GGTTCGTCGT TATCGGTATC GAATCAACAA TGTCGAATCC TGCAGCCGTC 
    ACCGCCGGCA GAGGATCAAT CACTCACGTC ATATTCGACA TGGACGGTCT
    TCTTCTCGAT ACTGAGAAGT TTTACACTGA GGTCCAAGAG ATTATACTTG
    CTAGGTTCAA TAAAAAGTTT GATTGGTCTC TCAAGGCTAA AATGATGGGT
    AGAAAAGCAA TAGAAGCTGC CAGGATCTTT GTTGAAGAAA GCGGGATTAG
    CGACTCTCTT TCAGCTGAGG ACTTTCTTGT CGAGAGAGAG TCAATGTTGC
    AAGACCTTTT CCCTACTAGT GAGCTCATGC CAGGGGCTAG TAGACTCATT
    AAGCATCTCC ATGTAAAGAA TATTCCAATA TGTATTGCTA CCGGTACTCA
    CACACGGCAT TATGATCTGA AAACCCAAAG ACACAGAGAG CTTTTCTCAT
    TGATGCATCA CGTAGTTCGT GGTGATGATC CAGAGGTGAA GCAAGGAAAG
    CCTGCTCCTG ACGGGTTTCT CGCTGCTGCT AGGAGATTTA AGGACGGTCC
    TGTGGATTCA CAAAAGGTTC TGGTGTTTGA AGATGCTCCA TCTGGAGTTC
    TTGCTGCTAA AAACGCCGGA ATGAACGTGG TTATGGTACC GGATCCTAGA
    CTAGATATCT CTCACCAAGA TGTTGCAGAT CAAATCATAA CCTCTCTAGT
    CGATTTTAAA CCGGAAGAGT GGGGCTTGCC TCCATTCGAA GATTCGAACT
    AAACGATACA AACGTCTTCA AGGTAATGAT AAAAACTCAA ATCATGAAGC
    TTATTCTTTG TCTTGTTATA TTGTTTTGGC ATGTACATGA CAAAGGCCAT
    GAGGCTTTAT GTCGTCAAGG GTTCTATGAT TTTCTGGCTA TTGAAGACAT
    AAAAAGAAAC TAAGTGGTGA CATGACGAGA GACCAAACAA AAAAATTTGC
    CTCAACGTTT AAACAAATTA TTTTTGTACA ACTACTCTTA CCCACAAGTT
    TCAACATTGG CTTATCTTAA CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT5G57440.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 3 1.4e-07
    HMMPfam Haloacid dehalogenase-like hydrolase 8.8e-17
    HMMPanther 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 7.9e-56
    superfamily HAD-like 7.4e-40
    Gene3D no description 2.7e-23

    See the detailed result >

    AT5G57440.1

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Curator Summary
    a member of haloacid dehalogenase-like hydrolase family
    Computational Description
    GS1; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphatase 1 (TAIR:AT4G25840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR