F05833

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)
T2	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05833

Determination of introduced cDNA(s)

RAFL06-68-G04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-G04 - Resource: pda03294

full reading [+] show sequence

GGTTCGTCGT TATCGGTATC GAATCAACAA TGTCGAATCC TGCAGCCGTC 
ACCGCCGGCA GAGGATCAAT CACTCACGTC ATATTCGACA TGGACGGTCT 
TCTTCTCGAT ACTGAGAAGT TTTACACTGA GGTCCAAGAG ATTATACTTG 
CTAGGTTCAA TAAAAAGTTT GATTGGTCTC TCAAGGCTAA AATGATGGGT 
AGAAAAGCAA TAGAAGCTGC CAGGATCTTT GTTGAAGAAA GCGGGATTAG 
CGACTCTCTT TCAGCTGAGG ACTTTCTTGT CGAGAGAGAG TCAATGTTGC 
AAGACCTTTT CCCTACTAGT GAGCTCATGC CAGGGGCTAG TAGACTCATT 
AAGCATCTCC ATGTAAAGAA TATTCCAATA TGTATTGCTA CCGGTACTCA 
CACACGGCAT TATGATCTGA AAACCCAAAG ACACAGAGAG CTTTTCTCAT 
TGATGCATCA CGTAGTTCGT GGTGATGATC CAGAGGTGAA GCAAGGAAAG 
CCTGCTCCTG ACGGGTTTCT CGCTGCTGCT AGGAGATTTA AGGACGGTCC 
TGTGGATTCA CAAAAGGTTC TGGTGTTTGA AGATGCTCCA TCTGGAGTTC 
TTGCTGCTAA AAACGCCGGA ATGAACGTGG TTATGGTACC GGATCCTAGA 
CTAGATATCT CTCACCAAGA TGTTGCAGAT CAAATCATAA CCTCTCTAGT 
CGATTTTAAA CCGGAAGAGT GGGGCTTGCC TCCATTCGAA GATTCGAACT 
AAACGATACA AACGTCTTCA AGGTAATGAT AAAAACTCAA ATCATGAAGC 
TTATTCTTTG TCTTGTTATA TTGTTTTGGC ATGTACATGA CAAAGGCCAT 
GAGGCTTTAT GTCGTCAAGG GTTCTATGAT TTTCTGGCTA TTGAAGACAT 
AAAAAGAAAC TAAGTGGTGA CATGACGAGA GACCAAACAA AAAAATTTGC 
CTCAACGTTT AAACAAATTA TTTTTGTACA ACTACTCTTA CCCACAAGTT 
TCAACATTGG CTTATCTTAA CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

AT5G57440.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	HAD-superfamily hydrolase, subfamily IA, variant 3	0.00000014
HMMPfam	Haloacid dehalogenase-like hydrolase	8.8e-17
HMMPanther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	7.9e-56
superfamily	HAD-like	7.4e-40
Gene3D	no description	2.7e-23

See the detailed result >

AT5G57440.1

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator Summary: a member of haloacid dehalogenase-like hydrolase family
Computational Description: GS1; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphatase 1 (TAIR:AT4G25840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR