F06046

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06046

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06046

Determination of introduced cDNA(s)

  • RAFL08-12-N11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-N11 - Resource: pda17586

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-12-N11 - full reading 
    TGAAAATAGT TTGGTTTCTG CATCCACCCC TTTCTTCGAA TCTCGACGGC 
    TGAAACAGAT TCTAAATTTA TCTCCGGTGA GAAAGAGATA GAGAGCGTTG 
    ATTCCGGCGA AAAGATGTCT GAATTCGAAG ATCACGAGGG AAACGGTACG 
    GTTGCTGACG CGATTTACGA CGAAGAGAAT GGTGGCCGCG ACGGCGAAAT 
    CGAGGATCAA TTGGACTCGA AACCCAAGAG AGAATCGCGT GACCATGAAA 
    GAGAGACATC AAGAAGTAAA GATAGAGAAA GAGAGAAGGG TCGTGATAAG 
    GACAGAGAAA GAGACTCTGA AGTCTCTCGC CGAAGCAGGG ATAGAGATGG 
    AGAGAAAAGC AAGGAGAGGA GTAGAGACAA AGACAGAGAT CATCGTGAGC 
    GTCATCACAG AAGTAGTCGT CACAGGGATC ATAGCAGGGA GCGTGGTGAA 
    AGAAGAGAAC GTGGTGGTAG GGATGATGAT GATTACCGTC GAAGCCGTGA 
    TCGTGACCAT GATAGGCGGA GAGATGATAG AGGAGGAAGA CGCAGTCGTC 
    GATCTCGATC TCGTTCAAAG GATAGATCTG AGCGCAGAAC AAGGTCACGA 
    TCTCCATCGA AAAGTAAGCA GCGAGTCAGT GGATTCGATA TGGCACCTCC 
    AGCCTCTGCA ATGTTAGCTG CTGGTGCTGC TGTTACAGGC CAAGTTCCTC 
    CCGCTCCACC AACTCTTCCT GGGGCTGGAA TGTTTCCCAA CATGTTTCCA 
    TTGCCGACTG GACAGTCATT TGGGGGACTC TCTATGATGC CAATTCAGGC 
    TATGACACAG CAGGCAACTA GACATGCTCG CAGAGTCTAT GTCGGTGGGC 
    TTTCCCCTAC GGCAAATGAA CAGTCTGTGG CTACATTTTT TAGTCAAGTT 
    ATGGCTGCTG TTGGTGGAAA CACTGCTGGT CCAGGTGATG CAGTTGTTAA 
    TGTCTACATA AACCACGAGA AGAAGTTTGC TTTTGTGGAG ATGCGATCTG 
    TTGAAGAGGC AAGTAACGCT ATGTCTTTGG ATGGGATTAT ATTTGAGGGA 
    GCTCCGGTGA AGGTGCTTCT GGTGGGCTTG AGGGACCAGA TCGTATTTTT 
    GTTGGTGGAC TTCCATATTA CTTCACGGAA TCACAAGTGA GGGAGTTGTT 
    GGAGTCCTTT GGAGGCCTCA AGGGCTTTGA TCTTGTAAAA GATCGAGAAA 
    CAGGGAACTC TAAAGGATAT GCCTTTTGTG TGTACCAAGA TCTTTCTGTT 
    ACAGATATCG CGTGCGCTGC CCTAAATGGT ATCAAGATGG GAGATAAGAC 
    TCTTACAGTG AGACGTGCCA ACCAGGGAAC AATGCTACAA AAGCCTGAAC 
    AAGAGAACGT ATTATTGCAT GCACAGCAGC AAATAGCTTT TCAGAGGGTT 
    ATGTTACAGC CTGGTGCAGT GGCAACCACT GTGGTGTGTC TGACTCAAGT 
    TGTTACTGAG GATGAGCTTA GAGATGATGA GGAGTATGGA GATATAATGG 
    AAGACATGAG ACAGGAAGGC GGAAAGTTTG CCTTTTGCTA TAAAGAATCA 
    GCCCTAACAT ACACAGACAG GAGACTGCAT AAACCTCCTA ATCTATTTAT 
    CACCAATGGC CACTATTTCT TAAAAGAAAA AACTGACTTG TTTTTGTCTG 
    TGTTTTCTTG TCTTGTATTC GAAATGTTTT GTTCTTTAAC TCTTAAAATG 
    CAGGTGCTTT GACCAATGTT GTGATTCCGC GTCCAAGCCC CAATGGTGAG 
    CCAGTGGCAG GCCTTGGCAA GGTGTTTTTG AAGTATGCCG ATACAGATGG 
    CTCGACTAGG GCAAGATTCG GGATGAATGG TAGGAAATTT GGAGGAAATG 
    AAGTCGTTGC AGTGTATTAC CCTGAAGACA AGTTTGAACA GGGTGATTAT 
    GGAGCCTGAT CACTTCTTTG TTTGCTTTCT ATTACTTAAA AGTTAAGTAC 
    TTTGCTTCAG TTTCAAGACC CTTTTGCGTG ATTGTAAGAG TATGAGATTA 
    TCGACACGTT GCTTATTATA ACGTTTTTAT CACAAAAAAA A

    Gene models with high sequence identity

    1. AT4G36690.2 [+] show detail - U2 snRNP auxilliary factor, large subunit, splicing factor
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 1.3e-17
    Gene3D Nucleotide-binding, alpha-beta plait 5.6e-19
    Gene3D Nucleotide-binding, alpha-beta plait 2.4e-14
    Gene3D Nucleotide-binding, alpha-beta plait 2.6e-20
    Gene3D Nucleotide-binding, alpha-beta plait 5.8e-05
    ProfileScan RNA recognition motif, RNP-1 11.656
    ProfileScan RNA recognition motif, RNP-1 15.443
    HMMSmart RNA recognition motif, RNP-1 9.5e-12
    HMMSmart RNA recognition motif, RNP-1 1.4e-20
    HMMPanther SPLICING FACTOR U2AF LARGE SUBUNIT 2.3e-20
    HMMPanther RNA-BINDING PROTEIN 2.3e-20
    HMMPanther SPLICING FACTOR U2AF LARGE SUBUNIT 2.6e-71
    HMMPanther RNA-BINDING PROTEIN 2.6e-71
    superfamily RNA-binding domain, RBD 8.5e-14
    superfamily RNA-binding domain, RBD 6.6e-06
    superfamily RNA-binding domain, RBD 1e-20

    See the detailed result >

    AT4G36690.2

    Model type
    Protein coding
    Short Description
    U2 snRNP auxilliary factor, large subunit, splicing factor
    Computational Description
    ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 65300 Blast hits to 34004 proteins in 1640 species: Archae - 71; Bacteria - 4901; Metazoa - 34634; Fungi - 7219; Plants - 6371; Viruses - 283; Other Eukaryotes - 11821 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR