F06137

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06137

Determination of introduced cDNA(s)

RAFL05-15-K18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-K18 - Resource: pda17094

full reading [+] show sequence

CCGATCAGTT AATCAACGCA ACGCCGAGAA GCTTTTTCAG GGGTTTGGTG 
CGTTGAATTT GTGGATCAAG AAACAATGCA AATTCAATGC AAAACCCTAA 
CTTTTACAGT TTCTTCGATT CCTTGTAACC CAAAGCTACC ATTCCCATCT 
TCCCTCACTT TACGGTCATG GAATCCTTCA TTCCCGAGTT TCAGGAGCTC 
CGCTGTTTCC GGACCAAAGT CATCACTGAA GCTGAACAGG TTTTTAAGAA 
ACTGTGCAAG TACGAATCAG GAGCTTGTTG TTGATGGAGA AACCGGAAAT 
GGGTCGATTT CGGAGCTCCA AGGAGATGCA GCAAATGGTT CGATTTCGCC 
GGTGGAAGTG GAAGCAGAAG TAGAAGAAGT GAAGGTAGAT GATTTGGCGA 
CTCAGAGCAT TTGGGGACAG ATGAAAGAGA TCGTCATGTT TACCGGACCT 
GCCGCGGGAT TGTGGCTATG TGGGCCGTTG ATGAGTCTCA TTGATACGGC 
GGTGATTGGT CAAGGAAGCT CACTCGAACT CGCTGCTTTA GGTCCTGCTA 
CCGTCATCTG TGATTATTTG TGTTATACGT TCATGTTCCT CTCAGTTGCG 
ACTTCAAATC TTGTTGCTAC CTCTCTTGCT CGGCAGGATA AAGATGAAGT 
ACAACATCAG ATATCGATCT TGCTTTTCAT TGGGTTGGCT TGTGGAGTCA 
CGATGATGGT GTTGACAAGA CTGTTTGGTT CCTGGGCACT AACTGCTTTT 
ACAGGGGTAA AGAATGCCGA CATTGTTCCA GCAGCTAATA AATATGTTCA 
GATTCGTGGT TTAGCATGGC CAGCTGTTCT CATTGGATGG GTTGCTCAAA 
GTGCAAGTCT TGGTATGAAA GACTCATGGG GACCTCTTAA GGCTTTGGCG 
GTTGCTAGTG CAATAAACGG TGTTGGTGAT GTGGTCTTAT GCACCTTTCT 
AGGATATGGT ATAGCAGGTG CAGCTTGGGC AACTATGGTG TCACAAGTTG 
TTGCTGCTTA TATGATGATG GACGCATTGA ACAAGAAAGG ATACAGCGCA 
TTCTCATTCT GTGTTCCTTC TCCAAGTGAA CTTTTGACGA TTTTTGGACT 
CGCTGCCCCT GTCTTTATAA CTATGATGTC AAAGGTTTTG TTCTATACGC 
TCCTTGTGTA CTTTGCTACA TCAATGGGTA CAAATATCAT AGCTGCTCAT 
CAGGTTATGC TTCAGATATA TACCATGAGT ACGGTTTGGG GGGAGCCTCT 
CTCTCAAACT GCACAGTCCT TTATGCCTGA GCTTTTATTC GGAATCAATC 
GTAATTTGCC TAAAGCTAGG GTGCTTCTGA AGTCACTAGT TATCATCGGA 
GCTACGCTAG GAATAGTAGT CGGAACCATT GGCACAGCAG TTCCATGGCT 
GTTCCCTGGC ATCTTCACAC GTGACAAGGT TGTCACATCC GAGATGCACA 
AGGTCATAAT ACCGTATTTT CTTGCTTTAT CCATCACTCC AAGTACTCAC 
AGTCTTGAAG GCACCTTACT GGCTGGAAGA GATCTTAGAT ATATCAGCTT 
GTCAATGACT GGATGCTTAG CGGTCGCTGG GCTTCTACTT ATGCTTCTGA 
GCAATGGAGG ATTTGGTTTG AGAGGCTGCT GGTATGCTCT CGTGGGATTC 
CAATGGGCTC GGTTTTCTCT ATCTCTTTTC CGCCTTCTAT CGCGGGATGG 
TGTACTGTAC TCCGAAGATA CAAGCCGATA CGCTGAGAAA GTGAAAGCTG 
CGTAGCTCAG TAAGTCACCG TATACCTCAC AAGAAAAAGT ATAATGAACA 
GAGAACAGCT TCATTCAGTT GTAGATCAAT GGGTTACTCT GTTTCAAGAT 
TGTATTCTTT AAGAACATGA AAATGTATTC GACTGAATAG AAAAGTCTTG 
GCATTAATAG GCCCTGCTTC AACTCCTGTG ATTCCCCTGT ATATAAAAGA 
TGATACAAAC AAACTAAAAA AAAAA

Gene models with high sequence identity

AT2G21340.1 [+] show detail - MATE efflux family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	DNA-DAMAGE-INDUCIBLE PROTEIN F	5.3e-191
HMMPanther	Multi antimicrobial extrusion protein MatE	5.3e-191
HMMPfam	Multi antimicrobial extrusion protein MatE	4.8e-12

See the detailed result >

AT2G21340.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7799 Blast hits to 7783 proteins in 1733 species: Archae - 152; Bacteria - 6456; Metazoa - 30; Fungi - 49; Plants - 387; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link: InterPro Scan - TAIR