F06528

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06528

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06528

Determination of introduced cDNA(s)

  • RAFL06-68-H02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-H02 - Resource: pda03297

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-H02 - full reading 
    ATAAACCATT CGATCAGACC AAATCCCAGC CGTTTAACTT GATCATCCCA 
    AAGATGTTTG AGATTATTCA GGCGGTCTTC TCCGCCGGGG TTGCACTAGC 
    TCTTTTGACA TTCGCCGGTA TAACCCTCGG CGGCTCAGTG GTCGCATGTA 
    TCATAAGCAC ACCACTTTTT GTCATTTTCA GTCCCGTTCT CGTGCCAGCG 
    ACTATAGCCA CTACATTGCT AGCTTCAGGT TTCACAGCCT CCGGTTCCTT 
    TGGTGCCACG GCTTTCACCA TCCTTTCGTG GCTCTACAAG AAACGTACAG 
    GGAGGGACCT ACCAAAAATT CCAGGATTGA CGCCACCGGC TCCGGCGTCT 
    AACCCAGCAG GTTCCGGCGT CTAATCCAGC AGAATCGGGG AAATACGATT 
    AGGCGTTTCC TAATTTGGGA TGATGTATGA AGGAACTTGA TCATACTAAA 
    TTACTGGGGT TCCATAAATA AAAATAAAAA TTGATCTATC CTCTCTTTAA 
    TAAAAATACT AGTTACCTCC GAATATCATT CCATTGATGT ATATCGTGTG 
    TTACAAAAAG TATAATAAAA TGTAATCGTC TTTATTGTAT TTTTTTAATG 
    AAGTAATATC ATTGAGATTG CCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G07550.1 [+] show detail - glycine-rich protein 19
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Oleosin 0
    HMMPfam Oleosin 1.1e-29

    See the detailed result >

    AT5G07550.1

    Model type
    Protein coding
    Short Description
    glycine-rich protein 19
    Curator Summary
    member of Oleosin-like protein family
    Computational Description
    glycine-rich protein 19 (GRP19); CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: glycine rich protein 17 (TAIR:AT5G07530.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR