F06540

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06540

Determination of introduced cDNA(s)

RAFL05-19-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-H13 - Resource: pda09357

full reading [+] show sequence

AAAAACACTG AAGCAGACAT TAGCGTTGAG AAAAAAAAAA AAGTAAGAAC 
GAGAGAGAGA AAGCCATGTC TGCGAAAACA ATCCTATCAT CAGTAGTTTT 
GGTGGTTCTC TTCGCCGCAT CAGCAGCGGC TAATATCGGA TTCGATGAGT 
CAAACCCGAT CCGAATGGTC TCCGATGGTC TCCGGGAGGT AGAAGAATCT 
GTTTCCCAGA TCTTAGGTCA ATCTCGTCAC GTTCTCTCTT TCGCTCGCTT 
CACTCACCGA TATGGTAAAA AGTATCAGAA CGTGGAGGAG ATGAAGCTTC 
GATTCTCGAT TTTCAAGGAG AATCTTGATT TGATCAGATC CACCAACAAG 
AAAGGCTTAT CTTACAAACT CGGTGTTAAT CAATTTGCTG ATTTGACATG 
GCAAGAGTTT CAAAGGACCA AGCTTGGTGC TGCTCAGAAC TGCTCTGCCA 
CTTTAAAGGG CAGCCACAAG GTCACAGAAG CAGCTCTTCC TGAAACAAAA 
GACTGGAGAG AAGATGGTAT CGTTAGTCCG GTCAAAGATC AGGGAGGTTG 
TGGATCTTGC TGGACATTCA GCACAACTGG AGCTCTTGAG GCAGCTTACC 
ATCAGGCATT TGGAAAAGGA ATTTCTCTCT CTGAGCAACA GCTTGTGGAT 
TGTGCTGGAG CTTTCAATAA CTATGGTTGC AATGGTGGCC TTCCTTCTCA 
AGCCTTTGAA TACATCAAAT CCAACGGTGG CCTCGACACA GAGAAAGCTT 
ATCCTTATAC CGGTAAAGAT GAAACCTGCA AATTTTCAGC TGAAAACGTT 
GGTGTACAAG TCCTCAACTC AGTCAACATT ACTCTGGGTG CTGAAGATGA 
ACTGAAGCAT GCGGTTGGAT TGGTACGGCC AGTAAGCATA GCATTTGAGG 
TTATACACTC GTTCCGGCTT TACAAGAGTG GAGTTTACAC TGATAGTCAC 
TGTGGAAGTA CTCCAATGGA TGTGAACCAC GCGGTTTTGG CCGTTGGTTA 
TGGAGTTGAA GACGGTGTAC CATATTGGCT TATTAAGAAC TCATGGGGAG 
CGGATTGGGG CGACAAAGGT TACTTCAAGA TGGAGATGGG GAAGAACATG 
TGTGGTATTG CTACATGTGC ATCATACCCC GTTGTGGCTT GAGATGATCA 
GCGAATGTGG TTGGTCAATT ATCAAATTAC GAAATGTTCA CGTATTTATT 
GGATTAAGAC ATTACGTAAA AGTTGGGACT TGGGAATGCA TATGGTTTAT 
GCTTGTTGTA ACATAAAAAG GTCTGTTAAT ATGTACAAAA TAAAGCCAAA 
ACTATAGACG ACAAATTTAT AATATTTTCA TGTTAAAAAA AAAAAAAAAG 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

AT5G60360.1 [+] show detail - aleurain-like protease
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Peptidase C1A, papain C-terminal	4e-79
HMMPfam	Proteinase inhibitor I29, cathepsin propeptide	1.4e-16
HMMSmart	Proteinase inhibitor I29, cathepsin propeptide	7.3e-22
HMMSmart	Peptidase C1A, papain C-terminal	2.2e-113
PatternScan	Peptidase, cysteine peptidase active site	0
PatternScan	Peptidase, cysteine peptidase active site	0
PatternScan	Peptidase, cysteine peptidase active site	0
superfamily	Cysteine proteinases	1.3e-110
HMMPanther	CYSTEINE PROTEASE	2.1e-289
HMMPanther	Peptidase C1A, papain	2.1e-289
Gene3D	no description	2.5e-109
FPrintScan	Peptidase C1A, papain C-terminal	2.2e-10
FPrintScan	Peptidase C1A, papain C-terminal	2.2e-10
FPrintScan	Peptidase C1A, papain C-terminal	2.2e-10

See the detailed result >

AT5G60360.1

Model type: Protein coding
Short Description: aleurain-like protease
Curator Summary: Encodes a senescence-associated thiol protease.
Computational Description: aleurain-like protease (ALP); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, proteolysis, aging; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G45310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR