F06617

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06617

Determination of introduced cDNA(s)

RAFL09-16-K05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-K05 - Resource: pda01921

full reading [+] show sequence

GAACCACCAT ACACACTTCA ATTTCAAATA AGAGCTTTTC TTCAGTTGTT 
GCTCAGAGAC TTAACCAATC AACCATGGCG AAGATGATGA TGTTGCAACA 
GCATCAGCCT TCTTTCTCTC TCCTTACTTC TTCTCTGTCT GACTTCAATG 
GCGCTAAGCT CCATTTACAA GTCCAGTACA AGAGGAAGGT TCATCAGCCA 
AAAGGAGCAC TCTATGTTTC AGCGTCGAGC GAAAAGAAGA TTCTGATAAT 
GGGTGGTACT CGATTCATTG GTCTGTTCTT GTCCAGGATC CTTGTCAAAG 
AGGGACATCA GGTTACATTG TTCACAAGGG GTAAATCTCC TATTGCCAAA 
CAATTGCCCG GTGAATCTGA CCAAGACTTT GCTGATTTCT CTTCTAAGAT 
TCTTCACTTG AAAGGAGACA GAAAGGACTA TGACTTTGTG AAGTCAAGTC 
TTTCAGCAGA AGGCTTCGAT GTTGTTTATG ATATCAACGG GAGGGAGGCC 
GAAGAAGTTG AGCCCATACT AGAAGCACTA CCCAAACTAG AGCAGTACAT 
CTACTGTTCT TCAGCTGGTG TTTATCTGAA ATCTGATATC TTGCCACATT 
GTGAGGAGGA TGCAGTTGAT CCGAAGAGCA GGCACAAGGG GAAGCTGGAG 
ACTGAGAGCT TACTGCAATC AAAAGGTGTA AACTGGACTT CTATACGTCC 
TGTCTACATC TACGGTCCAT TGAATTACAA CCCCGTCGAA GAATGGTTTT 
TCCACCGTCT AAAGGCAGGT CGCCCAATCC CGGTTCCAAA CTCTGGGATA 
CAGATCTCAC AACTCGGTCA CGTTAAGGAC TTGGCAACAG CCTTTCTCAA 
CGTGCTTGGT AACGAGAAAG CCAGCAGAGA GATATTCAAC ATCTCGGGGG 
AGAAATATGT TACCTTTGAT GGGTTAGCAA AAGCTTGCGC AAAGGCCGGT 
GGGTTTCCGG AGCCAGAGAT TGTTCATTAC AACCCGAAAG AGTTCGACTT 
TGGGAAGAAG AAGGCATTCC CTTTCCGTGA TCAGCATTTC TTTGCATCGG 
TGGAGAAAGC AAAGCATGTC CTCGGATGGA AACCGGAGTT CGACTTAGTG 
GAGGGTCTCA CTGACTCATA CAACCTTGAT TTCGGTCGCG GAACATTCCG 
GAAAGAAGCG GATTTCACCA CTGACGACAT GATTCTGAGC AAGAAACTTG 
TTCTTCAATA ATCGAAATCC TAAGAGTTGC TCATTCTTGG CTTGTATGAT 
TCTGATCACC CGGTTCTCTT AAAGTTCTGA ACTTTATTGT CATCTCACGT 
ATGTTATGGT CCGGATTTTG TTCGACTTTT CTCTAAAGAA GTCAAGCTAG 
GGACGATGAA GAAACCGAGA AAGTAAGTAC ACGAGAAAGA GACGGTCTGG 
CTCTTGACTT AAAAAAAAAA AAAAAAAAAA AGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

AT1G09340.1 [+] show detail - chloroplast RNA binding
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	2.9e-47
HMMPfam	NAD-dependent epimerase/dehydratase	2.4e-13
Gene3D	NAD(P)-binding domain	1.6e-18
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	3.8e-117
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	3.8e-117

See the detailed result >

AT1G09340.1

Model type: Protein coding
Short Description: chloroplast RNA binding
Curator Summary: Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
Computational Description: chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).
Link: InterPro Scan - TAIR