F07001

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07001

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07001

Determination of introduced cDNA(s)

RAFL05-09-B20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-B20 - Resource: pda01025

full reading [+] show sequence

GAACCTACCA TACTTCACCA CATAACCACT TCTGTCTCTG CGAATCTCCA 
TAAGACTCTT TGAGAAGCTT TCCTCTGTTT CTCCGCTGTT ATGGGTAGCT 
CCGGCGACGT TAACTGGAAA CTTGCGGACC ACCCCAAGCT TCCCAAAGGC 
AAAACTATCG GTTTGATTGT TCTCGATGGA TGGGGTGAAT CTGATCCCGA 
TCAATACAAT TGCATCCATA AAGCTCCAAC TCCTGCCATG GATTCCCTTA 
AAGACGGGAA GCCCGACACA TGGAGGTTGA TCAAAGCTCA TGGTACCGCC 
GTTGGTCTCC CCAGCGAAGA CGACATGGGA AACAGTGAAG TTGGCCACAA 
TGCTCTTGGA GCTGGTCGAA TTTACGCTCA AGGTGCTAAG CTTGTTGATC 
TCGCCCTTGC TTCAGGGAAA ATCTATGAAG ATGAAGGTTT CAAATACATC 
TCTCAATCTT TTGAGAAAGG CACTGTGCAC CTTATTGGTC TTCTAAGCGA 
TGGTGGAGTT CACTCTCGTT TGGATCAAGT CCAGTTGCTG CTTAAGGGTT 
TTGCAGAACG TGGTGCTAAG AGAATCCGCG TCCATATTCT TACTGATGGT 
CGTGATGTTT TGGATGGTTC TAGTGTCGGA TTTGTTGAAA CTCTTGAAGC 
TGACCTAGCT GCTTTACGTG CGAAAGGTGT TGATGCTCAG GTTGCATCTG 
GTGGAGGTCG AATGTATGTC ACAATGGACC GTTATGAGAA TGATTGGAGT 
GTTGTTAAAC GAGGTTGGGA TGCACAAGTC CTTGGGGAAG CTCCCCACAA 
ATTTAAAAGC GCTCTTGAAG CAGTTAAGAC ACTGAGGGCA GAACCTGGTG 
CCAATGACCA GTATTTGCCT TCGTTTGTTA TTGTTGATGA TAATGGAAAG 
GCTGTGGGTC CAATTGTTGA TGGTGACGCA GTTGTTACAT TCAATTTCCG 
TGCTGATCGA ATGGTCATGC ATGCAAAGGC CCTCGAATAC AAAGATTTCG 
ACAAGTTTGA TCGCGTACGT GTCCCTGATA TACGTTATGC AGGAATGCTC 
CAATATGATG GAGAGCTTAA GCTTCCTAGC CGCTATCTTG TTTCTCCACC 
ATTGATTGAC AGAACTTCTG GTGAATATCT GGCACACAAT GGCGTTCGTA 
CTTTTGCTTG CAGTGAGACT GTGAAGTTTG GCCATGTAAC CTTCTTCTGG 
AATGGCAACC GCTCTGGATA TTTCAATGAA AAGTTAGAAG AGTACGTTGA 
GATTCCAAGT GATAGTGGAA TATCATTCAA TGTCCAGCCA AAGATGAAAG 
CACTGGAAAT TGCCGAGAAA GCAAGGGATG CTATCCTTAG TGGCAAGTTT 
GACCAGGTGC GTGTAAACCT GCCAAATGGA GATATGGTGG GGCATACTGG 
TGATATTGAA GCAACTGTTG TTGCCTGTGA AGCTGCTGAT CGTGCTGTGA 
GGACAATCCT TGATGCCATA GAACAGGTCG GAGGGATATA CGTTGTGACT 
GCAGATCACG GAAATGCTGA GGACATGGTT AAAAGGGACA AATCCGGCAA 
GCCTGCTCTC GATAAGGAAG GGAACCTTCA GATTCTTACC TCTCACACCC 
TTAAACCAGT GCCAATTGCC ATAGGAGGTC CTGGCTTGTC AGCAGGAGTT 
AGGTTTAGAC AGGATATCGA GACACCTGGG CTTGCAAATG TAGCTGCGAC 
AGTGATGAAC CTCCATGGAT TTGTGGCCCC GAGTGACTAT GAGACAAGTC 
TGATCGAAGT CGTCGAGAAG TGATGATTCT TGTTGTTGTA GTTCTTTTTA 
AAAGTCCCAC CTGAGCCTCT ATAGACTCTG ATTCTCTTTT AAGTTACTAT 
TTTCACCGCT CTCTAATAAG GCTCGTGATT TTTTGGGAGC CATACTGTAT 
ACTCGCCGGC CCTCTCACGA TGTTGTTCAA TTCACAGACT AAATTTGATT 
TATCTATTTC GCCAAAAAAA AAAAAAAAA

Gene models with high sequence identity

AT3G08590.1 [+] show detail - Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Alkaline phosphatase-like, alpha/beta/alpha	9.7e-24
Gene3D	Alkaline phosphatase-like, alpha/beta/alpha	2.5e-55
superfamily	BPG-independent PGAM, N-terminal	5.5e-61
superfamily	Alkaline-phosphatase-like, core domain	1.8e-44
HMMTigr	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	9.3e-81
HMMPIR	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent	4.3e-291
HMMPfam	Metalloenzyme	3.4e-95
HMMPfam	BPG-independent PGAM, N-terminal	4.9e-66

See the detailed result >

AT3G08590.1

Model type: Protein coding
Short Description: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
Computational Description: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TAIR:AT1G09780.1); Has 4794 Blast hits to 4787 proteins in 1681 species: Archae - 54; Bacteria - 3006; Metazoa - 34; Fungi - 85; Plants - 379; Viruses - 0; Other Eukaryotes - 1236 (source: NCBI BLink).
Link: InterPro Scan - TAIR