F07047

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07047

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07047

Determination of introduced cDNA(s)

  • RAFL05-12-F22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-F22 - Resource: pda02538

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-F22 - full reading 
    ATAGAACATT GAACAAAATG AAGACTAATC TTTTTCTCTT TCTCATCTTT 
    TCACTTCTCC TATCATTATC CTCGGCCGAG CAATGTGGTC GCCAAGCTGG 
    AGGAGCACTC TGCCCCAACG GTCTATGCTG CAGCGAGTTC GGCTGGTGCG 
    GTAACACCGA ACCATACTGT AAGCAGCCTG GCTGCCAAAG CCAGTGCACT 
    CCCGGTGGTA CTCCTCCTGG ACCCACCGGC GATCTTTCGG GCATCATTTC 
    AAGTTCTCAG TTCGATGATA TGCTTAAGCA TAGGAATGAT GCCGCTTGTC 
    CTGCTAGAGG TTTCTACACT TACAACGCCT TTATCACCGC TGCAAAGTCC 
    TTCCCCGGTT TTGGCACCAC CGGAGACACC GCCACGAGGA AGAAGGAGGT 
    CGCCGCCTTC TTCGGCCAGA CTTCCCATGA AACTACAGGT GGATGGGCTA 
    CAGCACCAGA CGGACCATAT TCATGGGGCT ACTGTTTCAA GCAAGAACAG 
    AATCCTGCTT CAGACTACTG TGAACCGAGC GCCACGTGGC CATGCGCATC 
    TGGCAAACGC TACTACGGAA GAGGACCAAT GCAACTGTCG TGGAACTACA 
    ATTACGGTCT ATGCGGTAGA GCAATAGGAG TTGACTTACT CAACAACCCT 
    GACCTTGTTG CCAACGACGC AGTGATCGCT TTCAAAGCCG CGATTTGGTT 
    CTGGATGACT GCTCAGCCTC CCAAACCGTC TTGCCATGCC GTGATAGCCG 
    GCCAGTGGCA GCCTTCAGAC GCCGACCGTG CCGCCGGGAG ATTACCGGGT 
    TATGGAGTGA TTACGAACAT CATTAACGGT GGATTGGAGT GTGGACGTGG 
    CCAAGACGGG AGAGTCGCCG ATCGTATAGG GTTTTATCAG AGGTATTGTA 
    ACATATTTGG TGTTAATCCT GGTGGTAATC TTGATTGTTA CAACCAAAGA 
    TCCTTCGTTA ACGGCCTCCT CGAAGCTGCT ATTTAGTAAC GAGAGTATTA 
    TTATTATAAT ATAATACGCA GCTTTGTATT ATCAAAACAA TAATATCAGA 
    CTAATAAAAC TCTTTC

    Gene models with high sequence identity

    1. AT3G12500.1 [+] show detail - basic chitinase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Chitin-binding, type 1 1.1e-05
    FPrintScan Chitin-binding, type 1 1.1e-05
    FPrintScan Chitin-binding, type 1 1.1e-05
    superfamily Lysozyme-like 2e-117
    superfamily Chitin-binding, type 1 6.9e-16
    HMMPfam Glycoside hydrolase, family 19, catalytic 2.4e-124
    HMMPfam Chitin-binding, type 1 1.9e-18
    Gene3D Chitin-binding, type 1 2.8e-12
    Gene3D no description 1.8e-84
    HMMPanther CLASS I CHITINASE 1.5e-129
    HMMPanther Glycoside hydrolase, family 19, catalytic 1.5e-129
    ProfileScan Chitin-binding, type 1 10.98
    PatternScan Chitin-binding, type 1, conserved site 0
    PatternScan Glycoside hydrolase, family 19, catalytic 0
    PatternScan Glycoside hydrolase, family 19, catalytic 0
    BlastProDom Chitin-binding, type 1 2e-16
    HMMPIR Glycoside hydrolase, family 19 1.5e-191
    HMMSmart Chitin-binding, type 1 4.9e-15

    See the detailed result >

    AT3G12500.1

    Model type
    Protein coding
    Short Description
    basic chitinase
    Curator Summary
    encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
    Computational Description
    basic chitinase (HCHIB); FUNCTIONS IN: chitinase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2944 Blast hits to 2653 proteins in 549 species: Archae - 0; Bacteria - 615; Metazoa - 38; Fungi - 228; Plants - 1922; Viruses - 10; Other Eukaryotes - 131 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR