F07102

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07102

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07102

Determination of introduced cDNA(s)

  • RAFL04-12-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-12-G15 - Resource: pda00318

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-12-G15 - full reading 
    ATCTATCTGG ATATTATTTT TTCACTTGGG GATTTGGAGA AACCTCTCCT 
    CTCTCTATCT ATAGCCATGG CTGCTTTCAC TTGTACCTCT CGTCCTCCGA 
    TTTCTCTCCG CTCCGAGACC AGAATCGTAT CCTCATCACC ATCGGCTTCT 
    TCTCTCTCTT CTCGGCGGAT GTTCGCCGTC TTACCGGAAT CATCAGGTTT 
    GAGAATCCGT CTTTCTCTCT CTCCGGCTTC GTTGACCTCG ATTCATCAAC 
    CTAGGGTTTC TCGATTACGA AGAGCCGTCG TCTGTGAAGC TCAGGAAACT 
    ACTACCGATA TTCAAGTGGT CAATGACTCG ACATGGGACT CTCTAGTTCT 
    TAAAGCAACT GGGCCTGTAG TTGTCGACTT TTGGGCACCA TGGTGTGGAC 
    CTTGCAAGAT GATTGATCCG CTTGTAAACG ATCTAGCACA GCATTACACT 
    GGGAAGATCA AGTTCTACAA ATTAAACACT GATGAATCTC CTAATACTCC 
    CGGCCAGTAC GGAGTTAGAA GCATCCCAAC GATCATGATC TTTGTCGGTG 
    GCGAGAAGAA GGATACAATC ATAGGTGCAG TGCCCAAAAC CACACTCACA 
    TCTAGCCTCG ACAAGTTCTT GCCATGAAAT ATCACTTGTG GAGTCTGTAA 
    GATCTCGTAT CTCTCTGTCT CTCGTTCTTG TTCTCATTAT CTCTGTAACT 
    CATTATCACT GAACATCTAG ACCTGGATAA ATAATATGAT GTCATGTCTT 
    ATGTCATAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT4G03520.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Thioredoxin domain 1.6e-31
    Gene3D Thioredoxin fold 3.2e-33
    superfamily Thioredoxin-like fold 5.3e-36
    ProfileScan Thioredoxin-like 13.045
    PatternScan Thioredoxin, conserved site 0
    FPrintScan Thioredoxin-like subdomain 2.3e-08
    FPrintScan Thioredoxin-like subdomain 2.3e-08
    FPrintScan Thioredoxin-like subdomain 2.3e-08
    HMMTigr Thioredoxin 5e-52
    HMMPanther THIOREDOXIN M(MITOCHONDRIAL)-TYPE 8.5e-42
    HMMPanther Thioredoxin, core 8.5e-42

    See the detailed result >

    AT4G03520.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Curator Summary
    chloroplast localized thioredoxin, similar to prokaryotic types.
    Computational Description
    ATHM2; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 20603 Blast hits to 19509 proteins in 2977 species: Archae - 276; Bacteria - 10688; Metazoa - 2669; Fungi - 1127; Plants - 1883; Viruses - 7; Other Eukaryotes - 3953 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR