F07243

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07243

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07243

Determination of introduced cDNA(s)

  • RAFL07-14-G23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-14-G23 - Resource: pda04254

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-14-G23 - full reading 
    TGGCAAAACT AAAGACTGTT GTCTAAAGCG AACCAACAAA AAGTCTTCAT 
    CTTTAATCAT TCAATGGCTT CTTCGTCTTC TATGCAGATG GTTCACACTT 
    CCCGCTCCAT TGCCCAGATT GGGTTCGGTG TTAAGTCGCA ATTAGTTTCT 
    GCAAATCGAA CAACTCAATC AGTTTGCTTT GGAGCTCGTT CCTCTGGAAT 
    TGCATTATCT TCGAGATTGC ACTATGCATC ACCCATTAAG CAATTTTCTG 
    GGGTTTATGC GACCACCAAG CATCAGAGAA CCGCTTGTGT TAAATCCATG 
    GCTGCTGAGG AAGAAGAAGT AATCGAACCT CAAGCTAAAG TGACAAACAA 
    GGTTTACTTT GATGTGGAAA TTGGAGGTGA AGTTGCTGGC AGAATTGTGA 
    TGGGTCTCTT TGGAGAAGTT GTGCCTAAAA CCGTTGAAAA CTTCCGTGCC 
    TTGTGTACTG GTGAGAAGAA ATACGGGTAC AAGGGTTCCT CTTTCCATCG 
    TATTATTAAG GATTTCATGA TCCAAGGAGG TGATTTCACC GAGGGAAATG 
    GTACTGGAGG TATTAGTATT TACGGTGCCA AGTTCGAAGA TGAAAACTTC 
    ACCCTGAAGC ATACTGGACC TGGAATCTTG AGCATGGCAA ACGCTGGTCC 
    TAATACTAAT GGAAGCCAGT TTTTCATTTG TACCGTCAAG ACTTCATGGT 
    TAGATAACAA GCATGTCGTG TTTGGACAAG TAATTGAAGG TATGAAGCTT 
    GTTAGGACTC TTGAGTCTCA AGAGACTCGC GCTTTCGATG TTCCCAAGAA 
    AGGTTGTAGA ATCTATGCCT GCGGAGAGCT CCCGTTAGAT GCTTGATAAT 
    CACTATTGAC CGATGCATTG TCTTTGCCAT CTTTGTTCTG TTTTTTGCTA 
    TTATGACTAT TGAGGAATCC AAACCATCAA AAAGCCAAAG ATTTC

    Gene models with high sequence identity

    1. AT3G62030.1 [+] show detail - rotamase CYP 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 44.692
    HMMPanther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHI 7.9e-139
    HMMPanther CYCLOPHILIN 7.9e-139
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.3e-46
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.2e-68
    superfamily Cyclophilin-like 3.5e-74
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.3e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.3e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.3e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.3e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.3e-39

    See the detailed result >

    AT3G62030.1

    Model type
    Protein coding
    Short Description
    rotamase CYP 4
    Curator Summary
    nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
    Computational Description
    rotamase CYP 4 (ROC4); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 20-2 (TAIR:AT5G13120.1); Has 16567 Blast hits to 16531 proteins in 2704 species: Archae - 108; Bacteria - 6870; Metazoa - 2913; Fungi - 1380; Plants - 1296; Viruses - 4; Other Eukaryotes - 3996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR