F07321

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07321

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F07321

Determination of introduced cDNA(s)

  • RAFL09-49-P16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-P16 - Resource: pda06433

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-P16 - full reading 
    AAAGAAAGAA TCGTAACAGA CGGATCACAA ACAGTCACAG ATCCGAGCCC 
    TGTTTTGAGT TTACGAGAAG AATATTAAAA TTCTCATCTT TAACCATTTT 
    ATCCGATCAT GAATGTGAGA GACGAGGGAA AAACTACGGC GGAGAAACAC 
    GGCGGAGGAG AGGAGAATAA ATCACCGGAG AACAAATGGC GATTTAATTC 
    TCCTCTAGCT CAAGTGAGCT TAATGGGATT CGTTTGTTTC TGTTGTCCAG 
    GAATGTTCAA CGCTCTCTCC GGCATGGGAG GCGGTGGTCA AGTAGATCCA 
    ACCGCTGCTA ACAACGCTAA CACCGCCGTT TACACCGCTT TCACCGTTTT 
    CGGCCTTTTA GGCGGCGGGT TTTACAACGT CCTCGGTCCA CGGCTCACGT 
    TAGCCGCTGG ATGTTCGACT TACGTACTCT ACGCCGGATC TTTCCTCTAC 
    TACAACCATC ACCACCACCA AGCCTTCGCG ATAGTCGCCG GAGCTTTACT 
    CGGTTGCGGC GCGGGACTTC TCTGGGCCGG AGAAGGAGCT GTGATGACGT 
    CATACCCTCC GCCGCATCGG AAAGGCACTT ACATAGCGTT GTTCTGGAGT 
    ATCTTCAATC TCGGCGGCGT TATCGGTGGA TTAATCCCGT TTATCCTCAA 
    CTACCAACGT AGCTCCGCCG CATCGGTCAA CGACTCGACG TACATAGCGT 
    TCATGTGTTT CATGTTCGCC GGCGTTCTTC TCTCTTTCGG TATCCTCCCG 
    GCGACCTCCG TGATCCGTAA CGACGGATCT AGATGCTCTG CCGTGAAATA 
    CTCCCGTCCG TCAACTGAAG CAGCCGCCGT GCTACGGCTA TTCCTCGATC 
    GGAAAATGCT CCTCATCGTC CCCGCGGCTT GGGCTAGCAA TTTCTTCTAC 
    AGCTATCAAT TCAACAATGT GAATGGACTC CTCTTTAACT TAAGAACCAG 
    AGGATTCAAC AATGTCTTCT ACTGGGGAGC TCAAATGGCT GGATCCATCG 
    CCATTGGTTA CGTGATGGAC TTCAGCTTCA AAAGCCGGCG AGCTAGAGGA 
    TTCACCGGAA TATCACTAGT CGCGGTAATC GGAACCATTA TATGGGCGGG 
    CGGGTTAGCG AATCAGCACG GTTACTCGTT GGACAAACTA CCGGAAAAGA 
    AACTTGATTT TAAAGATTCC GGGATAGAGT TTGCGGGACC ATTCGTGTTA 
    TATATGAGCT ATGGATTGTT AGATGCAATG TATCAGAGTA TGGTTTATTG 
    GTTGATAGGA GCATTGGCTG ATGATTCGCA GACTTTGAGT AGATATAGTG 
    GATTCTACAA AGGAGTGCAG AGTGCAGGAG CTGCAGTGGC TTGGCAAGTG 
    GATACTCGTA AGGTTCCGTT AATGTCACAG CTTATTGTTA ATTGGTCACT 
    TACTACTGTA AGTTATCCTT TACTTGTTCT TCTTGTGTAT TTTTATGTTA 
    AAAATGATAA TGATGATGAT AGTAATGATA AGGTTTAGAA GATAGTAGTT 
    TATTAGAACA TTGAGTAAGT TAACTGTTTT TTAATACGAT GACGTTCTGT 
    TATGAATGTA ACAGTTACAT AGAGAAACAA AGATTTGAGG CTCTGAAATG 
    CCTTTATTCT TTT

    Gene models with high sequence identity

    1. AT1G18000.1 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major facilitator superfamily MFS-1 1.9e-13
    superfamily Major facilitator superfamily, general substrate transporter 1.1e-26
    HMMPanther ET TRANSLATION PRODUCT-RELATED 1.1e-06

    See the detailed result >

    AT1G18000.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G18010.1); Has 758 Blast hits to 750 proteins in 174 species: Archae - 0; Bacteria - 91; Metazoa - 141; Fungi - 422; Plants - 82; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR