F07524

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others) variegated (PATO:0000335) (Rosette leaf::Color::variegated)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07524

Determination of introduced cDNA(s)

RAFL06-13-H16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-H16 - Resource: pda09401

full reading [+] show sequence

AACAAAATCA TCAATTAATT TGCAATATAA CACACACTTA CTACTACATA 
GTAGTTTGAG GAATCTGGGA AGAAGCTCCA GTGGCAAAGA CTCAACATTT 
AAGATGAGAG GTGGGAGTCT ATGGCAGCTA GGGCAATCAA TAACCCGTCG 
TCTTGCTCAA TCTGACAAGA AGGTTGTGTC ACGTCGCTAC TTTGCCTCTG 
AAGCTGACCT GAAAAAGACT GCTCTTTACG ACTTCCATGT TGCCCATGGA 
GGAAAGATGG TTCCTTTTGC TGGTTGGAGT ATGCCAATTC AGTACAAAGA 
TTCGATTATG GACTCAACGG TTAACTGCAG GGAAAATGGG AGTTTGTTTG 
ATGTTGCACA TATGTGTGGT TTGAGCCTTA AGGGTAAAGA TTGTGTTCCT 
TTTCTTGAGA CACTTGTGGT TGCTGATGTG GCTGGTTTGG CTCCTGGAAC 
TGGGAGCTTA ACTGTGTTCA CAAACGAGAA AGGAGGTGCC ATTGATGACT 
CGGTGATTAC CAAAGTGACA GATGAACATA TCTATTTGGT GGTCAATGCT 
GGCTGTAGGG ATAAGGATTT GGCTCACATT GAAGAACACA TGAAGGCTTT 
CAAATCCAAA GGAGGTGATG TCTCGTGGCA TATCCACGAC GAGAGATCTC 
TTCTTGCCCT TCAGGGTCCT TTGGCTGCTC CAGTGCTTCA ACACCTGACT 
AAAGAAGACT TGAGCAAGCT TTACTTTGGC AATTTCCAGA TTCTGGACAT 
TAATGGTTCC ACATGTTTCC TTACCAGGAC TGGGTATACC GGGGAAGATG 
GGTTTGAGAT TTCGGTTCCA GATGAGCATG CTGTGGATCT AGCAAAAGCA 
ATCTTGGAGA AGTCCGAGGG TAAGGTAAGG CTTACGGGTC TAGGAGCAAG 
AGACAGTCTC AGGTTAGAAG CAGGACTTTG TCTATATGGA AACGACATGG 
AGCAACACAT TTCTCCTGTT GAAGCTGGGC TCACATGGGC CATAGGGAAG 
CGTAGAAGAG CCGAAGGTGG ATTTCTTGGC GCGGATGTGA TTCTCCAGCA 
GCTTAAAGAT GGACCTACAA TCAGAAGGGT CGGTTTCTTC TCCTCAGGAC 
CACCCGCAAG GTCGCATAGC GAGGTTCATG ATGAGAGTGG GAACAAGATT 
GGAGAGATCA CAAGTGGAGG GTTTAGCCCG AACCTGAAGA AGAACATAGC 
CATGGGATAT GTGAAGTCAG GTCAGCACAA GACTGGGACT AAAGTCAAGA 
TCTTGGTCCG TGGGAAACCA TATGAAGGCA GCATCACGAA GATGCCATTC 
GTGGCCACCA AATACTACAA ACCAACATGA AATGTGTGTC TCCTTCGTCC 
ATGACTTTGT CTCTTGCTTC TGTTAAATGA CTTGTGTTTT TCTTCTGTTC 
TGTTTTGGCC TGAAAAATGT ACGATATTTT GCCAAGAGGG CATTGCTTAT 
TTCATTTTTA TTGAAATAAA TTTAACGC

Gene models with high sequence identity

AT1G11860.1 [+] show detail - Glycine cleavage T-protein family
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Aminomethyltransferase folate-binding domain	8.5e-85
superfamily	Aminomethyltransferase beta-barrel domain	1.2e-27
HMMPIR	Glycine cleavage system T protein	5.3e-114
HMMTigr	Glycine cleavage system T protein	7.6e-119
HMMPanther	AMINOMETHYLTRANSFERASE	4.7e-212
HMMPanther	FAD NAD BINDING OXIDOREDUCTASES	4.7e-212
HMMPfam	Glycine cleavage T-protein, N-terminal	1.8e-64
HMMPfam	Glycine cleavage T-protein, C-terminal barrel	1e-23

See the detailed result >

AT1G11860.1

Model type: Protein coding
Short Description: Glycine cleavage T-protein family
Computational Description: Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3); Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139; Bacteria - 5685; Metazoa - 432; Fungi - 162; Plants - 109; Viruses - 0; Other Eukaryotes - 11997 (source: NCBI BLink).
Link: InterPro Scan - TAIR