F07631

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07631

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07631

Determination of introduced cDNA(s)

  • RAFL09-43-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-N08 - Resource: pda17729

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-N08 - full reading 
    GAAACCAAAA AAAAAAACTA ACTTTTTGGG ACTCCAGAAC TAATAATGGA 
    TCCCATAAAA CACATCTCTT TACCAGTTCT TGTCTTGTTT CTACTATTAT 
    CCGTGTCGGC GGGTCAACCC GGAACCCCGG ACCAGAGACA TGACCCGTAT 
    GCTTACAGCG GCAGTCTAAG TCCAGCCATG GCTGTTGTCG TTGTAGTTGT 
    CATCGCAGCT CTCTTCTTCA TGGGCTTCTT CACCGTCTAT ATACGTCACT 
    GTACTGGCGC AGTAGACGGT AGCGTTACTC CTGCAGGAGG AGCTAGGAGG 
    AGAGTGACGA ACGCAACGGT TGCGCGTGGG TTAGACGCGG AGACGATCGA 
    GACGTTTCCG ACTTTTGTTT ACTCAGAAGT GAAGACACAG AAGATTGGTA 
    AAGGAGCGTT GGAGTGTGCG ATTTGTTTGA ATGAGTTTGA AGACGATGAA 
    ACGCTGCGTC TGTTGCCTAA ATGTGATCAC GTGTTTCATC CTCATTGTAT 
    CGGCGCGTGG CTTCAAGGTC ACGTGACTTG TCCGGTTTGT CGGACTAATC 
    TTGCTGAACA GACGCCTGAA CCGGAAGTGG TGGTGGAAAC CGATCTTGAG 
    GCGCAGCAGC AATCGGCGGT TCCTGTACCG GTGGTGGAAC TTCCACGTGT 
    TAAATTCCCG AGGTCGCATA CGACAGGGCA TTCGGTGGTT TTACCGGGAG 
    AGAGTACCGA CCGGTTTACG CTTAGAGTAC CGGAAGAATT AAGGAAGAAG 
    ATAATGGCGA ATTGGAAATT GAACCGGTCG AATAGTGTTT TTGTTTTACC 
    GAGAGGAGGA AGCTCGAGGA GTGGTAAACA GGTTGACCGG TCGAGGGCTA 
    AATCGGACCG GTGGTTGTTC CGTAAAACTC CGTCGTTTCT ATGGAGGAAC 
    CGGGATGATG GTTCGATTAG GCTAGGTGGT ACCGGTAGTG TTAGAGGAAA 
    TTCAGTAACA AGTCCGAGCG GTGACTCGGT ACGAGCAGAC CGGTGGGCTT 
    TTCTTAGAAA CCCATCGTTT CTCTGGAGGA ATACGACGCC GGTTCCTTCG 
    CCGAGAGTTG AAGTCAATAA TAAGGACGGT GAAGGAACAT CGTCAGTTCA 
    ACATATCGGT ACAGTTGGTT CAACTAGCGG TTCCCTTAGG CTACCGGTTT 
    AGTGTTCGGT GATGTTTTGT GCATTGTTCA TAAACACGCA ATAGATTTTA 
    CGTAATTCTT TAATTTTGTT TGTCTTTTTC TGTAAGATAT TTAAATCGAC 
    AATCCAACGG AAAAAGGAGA TTGTTTTACT TAATTTATTT TATACTCTTC 
    AAAAGTCAAA CAAAGAACGA ACTGGAGATT GGTCTTGTTC TCAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT5G27420.1 [+] show detail - carbon/nitrogen insensitive 1
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 0.000003
    ProfileScan Zinc finger, RING-type 12.652
    superfamily RING/U-box 1.5e-17
    Gene3D no description 0.000000000000002
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000044
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 0.0000000000000017

    See the detailed result >

    AT5G27420.1

    Model type
    Protein coding
    Short Description
    carbon/nitrogen insensitive 1
    Curator Summary
    Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings.
    Computational Description
    carbon/nitrogen insensitive 1 (CNI1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR