F08108

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08108

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08108

Determination of introduced cDNA(s)

  • RAFL05-10-K03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-K03 - Resource: pda02491

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-K03 - full reading 
    AAGTCTTTCT GAAAAACACA TCTTTACACT TGAAATAAGT TTTTTCCTTT 
    CTTGGTAATA AAAATATCCT TTTCGTTTCT TCTTCTCCAC ACTTCTAGAA 
    GTTCTAGATT TTTCCTAGCT AACGTACCAG AAAAAAGGAA GCCAAGCCTA 
    GAAACACTAT AAAGATAAGA CACAAAGGAA GTCTGAGAAT TGTGAGTAAA 
    AATGTGTTTG GAAGTTGTGT ATCATGAAGA GAAGACGGAG CTTGGTCGGC 
    AACAAGCACC AGGGATGTGT CCTTATTGCG GCGGAAAAGT ATCGGCGGTG 
    GATATAGAGA CGAAGTGGTT GTTCTGTTTC TTACCACTTT GTTTCAAGGT 
    CAAACGCAAA TACTCATGTT CTTCGTGCGA GCGTCATCTC GTCTTGTATT 
    ATTGAAGAAA CACGTAGAGA GATGCGAAAT TGAAGTAAAG AGAAAAACCA 
    AAACAGAAAG AATGAAGAAA AGAAACAGAG GAGAAACTGA AAAAGATTGT 
    TTTATCTCTT TCATTTATTT GGTTGCTTCT CCTCTCAATG TTGAGGTTTT 
    TGCAGATTTC CTCTTGTGAC TTCTGATTTT GCTAGAAACG CCCTCTCGTG 
    TTGGTGAGTG GTGACATTGG TCAATTTTCA TTGAGTTCTT TATTTCTCGT 
    CTGAGTTTTG TGCAATGTAT ATAATTTGTT GGATTTGTTT AATAAAGATT 
    GTTATTCTTA A

    Gene models with high sequence identity

    1. AT4G29905.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G29905.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR