F08122

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08122

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08122

Determination of introduced cDNA(s)

  • RAFL08-11-G20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-11-G20 - Resource: pda04650

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-11-G20 - full reading 
    ATCGATCGAT AACCAAACGA AAAAAAACAT GGCCATCTCT TTCCTCTGTT 
    TTTGCCTCAT TACCCTCGCT TCGTTAATCT TTTTCGCCAA GAAGATTAAA 
    CACTTGAAAT GGAATCTTCC TCCAAGCCCT CCAAAGTTTC CGGTCATCGG 
    AAATTTACAC CAGATTGGAG AATTGCCTCA CAGGTCACTT CAACATCTCG 
    CCGAAAGATA CGGACCTGTG ATGCTTCTTC ACTTTGGGTT TGTCCCTGTA 
    ACTGTGGTCT CATCAAGAGA AGCAGCTGAA GAAGTGCTCA GAACTCATGA 
    CCTAGACTGT TGCAGCAGGC CTAAACTTGT CGGGACAAGG TTACTCTCGC 
    GGAATTTTAA AGATGTCTGT TTTACGCCAT ACGGTAACGA GTGGAAGGCG 
    CGGCGTAAGT TTGCCCTGCG TGAGCTTTTC TGTTTGAAAA AGGTTCAGTC 
    CTTTAGGCAT ATCCGAGAGG AAGAATGTAA CTTTCTGGTC AAGCAACTGT 
    CGGAATCCGC GGTTAATCGC TCTCCGGTCG ATTTGAGCAA ATCACTTTTC 
    TGGCTAACCG CTAGTATCTT TTTCAGAGTT GCCTTAGGAC AGAATTTTCA 
    TGAGAGCAAT TTTATCGATA AAGAAAAGAT CGAAGAGCTC GTGTTCGAAG 
    CTGAGACTGC CCTAGCAAGT TTCACTTGTT CTGATTTCTT CCCTGTTGCC 
    GGACTTGGAT GGCTTGTTGA TTGGTTTTCC GGACAACACA AGAGACTCAA 
    CGATGTTTTT TACAAGCTCG ATGCTCTGTT TCAACATGTC ATAGATGATC 
    ATTTAAATCC AGGAAGATCA AAAGAGCACG AAGACATCAT CGATTCAATG 
    TTGGATGCGA TTCATAAAGA AGGAAAAGAT AGTTCCTTAG AGCTCATAAT 
    AGATCATATT AAGGGGTTTC TCGCGAATAT ATTTCTTGCA GGGATAGACA 
    CAGGGGCCCT CACCATGATA TGGGCAATGA CGGAGCTCGT TAAAAACCCG 
    AAACTTATAA AGAAAGTTCA AGGCGAGATC CGAGAACAAC TTGGCAGCAA 
    TAAGGCGAGA ATCACCGAGG AAGATATCGA TAAAGTTCCT TACTTGAAGA 
    TGGTAATCAA AGAAACATTC AGGTTACACC CGGCAGCTCC TCTTATACTT 
    CCAAGAGAAA CAATGGCTCA CATCAAAGTT CAAGGGTATG ATATTCCTCC 
    CAAGAGGCGG ATCTTGGTCA ATGTTTCGGC TATCGGAAGA GATCCCAAAC 
    TCTGGACAAA CCCGGAAGAG TTTGACCCTG AGAGGTTTAT GGATAGCTCT 
    GTTGATTATA GGGGACAACA TTACGAGCTC TTACCATTTG GGTCCGGTCG 
    AAGGATATGT CCCGGGATGC CAATGGGGAT TGCTGCCGTC GAATTGGGAC 
    TCTTGAACTT ACTTTACTTC TTCGATTGGA AGTTGCCTGA TGGGATGACA 
    CATAAAGATA TTGATACTGA AGAAGCTGGT ACTCTTACAA TCGTCAAGAA 
    AGTACCTCTC CAGCTCGTTC CAGTTCGAGT TCAGTGATCA GACCAAACTC 
    CAAACGGTTT GGACCAAACC TTTTGAATAA ATATATCATG CAAATCATGT 
    AAGCTTCTCT GATGATGTAT GAAGTATATT TTTCAGTAAA ATACTAAATT 
    GAACGTTCAT TTGCGTTTGA GGAATGTAAT TAACGTTTAC GAACCTTACA 
    TGTTCCGGTT CTGATTCATC AAAATCCAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT3G26180.1 [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 20
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 9.1e-125
    PatternScan Cytochrome P450, conserved site 0
    HMMPfam Cytochrome P450 6.9e-94
    Gene3D Cytochrome P450 1.3e-122
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, E-class, group I 3e-45
    FPrintScan Cytochrome P450, C-terminal 4e-09
    FPrintScan Cytochrome P450, C-terminal 4e-09
    FPrintScan Cytochrome P450, C-terminal 4e-09
    HMMPanther CYTOCHROME P450, SUBFAMILY 71B 0
    HMMPanther Cytochrome P450 0

    See the detailed result >

    AT3G26180.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 71, subfamily B, polypeptide 20
    Curator Summary
    putative cytochrome P450
    Computational Description
    "cytochrome P450, family 71, subfamily B, polypeptide 20" (CYP71B20); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 19 (TAIR:AT3G26170.1); Has 32920 Blast hits to 32663 proteins in 1663 species: Archae - 46; Bacteria - 3164; Metazoa - 12063; Fungi - 6912; Plants - 9553; Viruses - 3; Other Eukaryotes - 1179 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR