F08251

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08251

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08251

Determination of introduced cDNA(s)

RAFL05-19-A18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-A18 - Resource: pda17130

full reading [+] show sequence

CCCAGACTGA TAGAGAGCGT CCGTTATTAG CATCGGAGGA GAGAGCTTAT 
GAAGAAACCG AGAAAGTTCT CATAGTCGGA ATCGACGAAG AAGAAGACGC 
TGATTACGAC GATGACCCCG GAAACTCTCC TAAATTCTCA TGGAAGAAGC 
TTTGGCTATT CACTGGACCT GGTTTTCTGA TGAGTATCGC TTTCCTCGAT 
CCAGGTAATC TCGAGAGCGA TCTTCAAGCT GGAGCCATCG CTGGTTACTC 
TTTGATTTGG CTATTGATGT GGGCTACGGC GATTGGGCTT CTGATTCAAC 
TTCTATCTGC CCGTCTCGGT GTGGCGACGG GTAGACATCT GGCGGAGTTG 
TGTCGAGAAG AGTATCCGAC TTGGGCAAGG ATGGTGCTTT GGATTATGGC 
GGAGATTGCT TTGATCGGAG CTGATATTCA GGAAGTTATT GGTAGTGCTA 
TAGCTATCAA GATCTTGTCT AATGGATTGG TTCCTCTTTG GGCTGGTGTT 
GTTATCACTG CTCTTGATTG TTTCATCTTT CTATTTTTGG AGAATTATGG 
AATAAGGAAA CTAGAAGCTG TGTTTGCTAT TTTGATTGCA ACAATGGCTC 
TTGCATTTGC TTGGATGTTT GGTCAGACGA AACCCAGTGG AACTGAGCTC 
CTTGTTGGAG CATTGGTCCC TAAGCTTAGC TCCAGGACTA TCAAACAAGC 
TGTTGGTATT GTGGGATGTA TTATCATGCC TAACAATGTG TTCTTGCATT 
CAGCACTTGT GCAATCCAGA GAAGTCGATC CGAAAAAGAG ATTCCGGGTC 
AAAGAAGCTC TCAAGTACTA CTCCATTGAA TCCACTGGTG CTCTTGCGGT 
TTCTTTCATT ATCAACGTCT TTGTGACCAC GGTGTTTGCC AAGTCGTTTT 
ACGGGACAGA GATAGCGGAC ACCATCGGTC TTGCAAATGC TGGACAGTAC 
TTACAGGACA AATACGGGGG TGGGTTTTTC CCGATACTGT ATATATGGGC 
GATTGGAGTC TTAGCTGCTG GTCAGAGTAG TACCATCACA GGTACGTACG 
CCGGACAGTT TATAATGGGA GGGTTCTTGA ATCTCAAGAT GAAGAAATGG 
GTTAGAGCCT TGATCACAAG AAGCTGTGCA ATCATACCAA CAATGATCGT 
GGCGCTTGTC TTTGATTCAT CGGATTCTAT GCTTGATGAG CTCAACGAAT 
GGCTAAACGT TCTTCAATCG GTTCAGATCC CTTTCGCTGT GATCCCACTC 
CTTTGCTTGG TCTCCAATGA GCAAATCATG GGCAGTTTCA AAATTCAACC 
TTTAGTCCAA ACAATCTCAT GGATAGTAGC TGCTCTTGTG ATAGCCATTA 
ATGGGTATCT AATGGTGGAT TTCTTCTCAG GAGCTGCAAC GAATTTGATT 
TTGCTTGTGC CAGTGATCAT ATTCGCAATT GCTTATGTTG TGTTTGTACT 
TTACCTTATC TCACGAGGAC TCACGTACAC TCCTTGGCAA CTAGTGGCTT 
CTTCACATAA AGAACCACAG AGGGATGATG AGTGAGTAAA GGAAAAGCAA 
AGAGACCTTT TCATTGAAGA ATAAGAATAA GAGAGATTGC TCTTAAAAAA 
AAAA

Gene models with high sequence identity

AT5G67330.1 [+] show detail - natural resistance associated macrophage protein 4
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Natural resistance-associated macrophage protein	1.50000965748778e-79
FPrintScan	Natural resistance-associated macrophage protein	1.50000965748778e-79
FPrintScan	Natural resistance-associated macrophage protein	1.50000965748778e-79
FPrintScan	Natural resistance-associated macrophage protein	1.50000965748778e-79
FPrintScan	Natural resistance-associated macrophage protein	1.50000965748778e-79
FPrintScan	Natural resistance-associated macrophage protein	1.50000965748778e-79
FPrintScan	Natural resistance-associated macrophage protein	1.50000965748778e-79
HMMPfam	Natural resistance-associated macrophage protein	5.99999999999995e-106
HMMPanther	PTHR11706:SF8	0
HMMTigr	Natural resistance-associated macrophage protein	0
HMMPanther	Natural resistance-associated macrophage protein	0

See the detailed result >

AT5G67330.1

Model type: Protein coding
Short Description: natural resistance associated macrophage protein 4
Curator Summary: Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.
Computational Description: natural resistance associated macrophage protein 4 (NRAMP4); FUNCTIONS IN: manganese ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: vacuolar membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 3 (TAIR:AT2G23150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR