F08411

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08411

Determination of introduced cDNA(s)

  • RAFL09-86-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-C12 - Resource: pda06883

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-86-C12 - full reading 
    CCGTCTCTTT CACTTACACT TTCACTTCAC GTTTGCGACT GTGTCGTCGT 
    CAAGCTCCGA ATCTCATCGG CGTTTCATCA TAATTATCTG TCCATCTATT 
    CACCGTACGA CTCCGTTTTA GAAATCTGTA GATGTCAATT TGAGAGAAAA 
    GACTGTCTTC ATTACAACAC ATTTGGGACA ACAAGGATCA CTCATGGCAG 
    TGGTGGATGT TCATCGTTTC GCTGAGTCAA TCACTTGCCA TGCTTGGAGT 
    CCTGATCTCT CCATGGTTGC TCTCTGTCCT AACAACACTG AAGTTCATAT 
    CTATAAATCA TTGTCTCAAG ACCACTGGGA GAGGTTACAT GTCCTCCAAA 
    AGCATGACCA AATTGTTTCT GGAATAGATT GGAGCTCAAA GTCCAACAAA 
    ATCGTCACTG TTTCTCATGA CAGGAACTCG TACGTCTGGA GCCTGGAAGG 
    AGCTGAATGG GTACCAACTC TCGTTATTCT TAGACTAAAT CGTGCTGCAC 
    TTTGTGTCCA ATGGAGCCCC AAAGAGAACA AGTTTGCTGT TGGAAGTGGT 
    GCTAAAACTG TTTGTATTTG CTATTATGAG CAAGAGAATA ACTGGTGGGT 
    CAGTAAGCTA ATCCGGAAAA GGCACGAATC TTCAGTCACA TCTGTTGCTT 
    GGCATCCTAA TAATGTTCTT CTGGCAACGA CATCAACAGA TGGAAAATGT 
    CGGGTATTTT CAACATTCAT CAAAGGAGTT GACACAAAGG ATTCAAAAGC 
    AGGCTCACCA GCGGAAACGA AATTTGGGGA GCAAATTCTT CAGCTTGATC 
    TCTCATATTC TTGGGCATTT GGTGTTAAAT GGTCTCCAAG TGGAAACACC 
    TTAGCATATG TAGGTCATAG CTCCATGATT TACTTTGTTG ATGATGTTGG 
    CCCTTCTCCT TTAGCCCAAA GCGTTGCATT CCGAGATTTG CCTCTTCGTG 
    ATGTCCTGTT TATTTCTGAG AAAATGGTGA TAGGGGTTGG ATATGACAGC 
    AACCCGATGG TATTTGCTGC AGATGATACT GGAATATGGA GCTTCATAAG 
    ATACATTGGA GAGAAGAAAG CGGCATCTTC AGGTTCCAGT TACAGTTCGC 
    AGTTTTCCGA AGCGTTTGGA AAATTCTACG GTAGTCAATC AAAGTCTACA 
    ACAGCCAACG ATGCTTCTGA TTCACGTGGA GGCGTTCATG ATAACAGCAT 
    AACTTCCATT GTGCCTCTGG GCAAAGGAGG GAGTCCTAAA GTTATGCGAT 
    TCAGCACTTC AGGATTGGAT GGCAAAATAG CCATATGGGA TCTAGAGAAC 
    ATGCAACAAG AACTTGGCAA TCAGTTTTAA TAAAATCTGG ATCAGTAGTC 
    AGCTTACTTA ATTTGTATAT CAGATTTTGT TTCGACTAGC CTTTTCACCT 
    TTTTCCAATT TCGTAATTGT CACACTTGGT AAACTGCATA ATAAAGGCCA 
    TGTTTTCCTG GTTTGTGTAA GGGCAGGTGT TATTAAGTTT TGAGC

    Gene models with high sequence identity

    1. AT2G31300.1 [+] show detail - actin-related protein C1B
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart WD40 repeat 180
    HMMSmart WD40 repeat 0.00036
    HMMSmart WD40 repeat 7.9
    HMMSmart WD40 repeat 1.5e-05
    HMMSmart WD40 repeat 7
    HMMSmart WD40 repeat 48
    ProfileScan WD40 repeat 2 10.943
    ProfileScan WD40 repeat 2 10.041
    ProfileScan WD40-repeat-containing domain 12.816
    HMMPanther ARP2/3 COMPLEX SUBUNIT 0
    HMMPanther ARP2/3 COMPLEX SUBUNIT 1 0
    Gene3D WD40/YVTN repeat-like-containing domain 2.1e-70
    HMMPfam WD40 repeat, subgroup 6.2e-05
    HMMPfam WD40 repeat, subgroup 0.52
    HMMPfam WD40 repeat, subgroup 6.7e-08
    superfamily WD40 repeat-like-containing domain 4.9e-55

    See the detailed result >

    AT2G31300.1

    Model type
    Protein coding
    Short Description
    actin-related protein C1B
    Curator Summary
    putative ARP2/3 protein complex subunit p41
    Computational Description
    actin-related protein C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1A (TAIR:AT2G30910.3); Has 4117 Blast hits to 2979 proteins in 306 species: Archae - 4; Bacteria - 869; Metazoa - 1495; Fungi - 819; Plants - 455; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR