F09131

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09131

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09131

Determination of introduced cDNA(s)

  • RAFL07-14-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-14-E15 - Resource: pda04247

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-14-E15 - full reading
    AAAGAAAGAT CATTAGTTTC TGAGGGGATA ACCATTTTTT TTCTTAAAAA 
    GTTTTTTTTT TTGTCAATTG GTCTTCTTCT TCCTCATCCG CTCGCTTATA
    TTTAATTTAA TAATAATAAA AATCGGTGTT CATTTTTATA TAAAAGTATA
    AATTTTGTGT TTGGTTGATC CATCCGTAGT CGTAGTAGAT CTACAAGCTC
    TGAAATTCCA CGCCCACATC TCCTCCGTCC TCTTGAGATC CTTCTCTTCA
    TTCATTTTCT TGCTCAACTT GAGTTGCTTC CAACATCTTG CAAGATTGTC
    TTTGAGTTCA TTCAGGTCTT GAAGAAGAGC ACTCTTTTAA GCTGTGTGAA
    ACTTGCGCCG TTCCTGTGAA GAACTACTTT TGGCATTGCA GATTTCAGAG
    AGCTGTGATT TGTGCTATCT TAAAAACGGA CAAGTTCTAT GTTGTGGCGG
    ATGAGATGAG GGATGCTATC TGGGTTGATG AATTTTCTGA ATGCCTGTCT
    CTGGCCACGG TCAGATCAGC AGGCTCGTTC TGCCTCAGAT TCTGGTGGCC
    GCCAAGAGGG TTTGCTCTGG TTCAGTGACT CCGGCCAGCA CGTCTTTGGT
    GACTTCTCCA TGGCCGTCGT TCAAGCCAAC AGCTTGCTAG AGGACCAGAG
    CCAGCTCGAG TCTGGCTCTC TTAGCTCCCA CGACTCTGGT CCCTTTGGCA
    CCTTTGTTGG CGTCTACGAC GGCCACGGTG GGCCTGAGAC ATCTCGCTTC
    ATCAATGATC ATATGTTCCA CCACCTCAAG AGGTTTACTG CAGAGCAACA
    GTGTATGTCA TCAGAGGTGA TAAAAAAAGC GTTCCAAGCC ACTGAAGAAG
    GCTTCTTATC CATAGTTACA AATCAATTTC AAACTAGACC TCAGATAGCC
    ACAGTGGGAT CATGCTGTCT TGTAAGTGTC ATCTGCGATG GGAAGCTATA
    CGTGGCCAAC GCAGGGGACT CACGGGCCGT TCTGGGACAA GTCATGAGGG
    TAACAGGTGA AGCTCATGCC ACTCAGCTCT CAGCAGAGCA CAACGCATCT
    ATAGAGTCAG TGAGACGGGA ACTTCAGGCC CTGCATCCGG ATCATCCAGA
    TATTGTGGTT CTGAAACATA ACGTCTGGCG AGTAAAAGGC ATCATTCAGG
    TTTCAAGATC CATTGGTGAT GTGTATTTGA AAAGGTCAGA GTTCAACAGG
    GAACCACTGT ATGCAAAATT CCGGCTGAGG TCACCGTTCA GCAAGCCATT
    ACTGAGTGCA GAGCCGGCGA TCACGGTGCA TACACTGGAG CCGCACGATC
    AGTTCATTAT ATGTGCATCA GATGGACTGT GGGAACATAT GAGCAACCAA
    GAAGCAGTAG ACATAGTCCA GAATCATCCG CGAAACGGGA TAGCAAAGCG
    GCTGGTGAAA GTAGCGCTAC AAGAAGCGGC AAAGAAGAGA GAGATGAGAT
    ACTCAGACCT GAAAAAGATA GACAGAGGAG TGAGGAGACA TTTCCACGAT
    GACATAACAG TGATTGTTGT CTTCTTTGAT ACAAACCTAG TGAGCAGAGG
    AAGTATGTTG AGAGGACCAG CCGTGTCAGT GAGAGGAGCG GGTGTGAATC
    TACCTCACAA CACCCTGGCG CCTTGCACCA CGCCCACTCA AGCTGCTGCT
    GCTGGCGCCT CCTGACTATT GAATTTTTAC GGTGTCCTTA AAATTCTTTC
    CAAGATCCTT CCTGTAACTA TATATAAATA TATATATTTG ATTATTATTA
    TCATTGACTG GGAAAGGATA TATCATCATC AAGTGGGAAA GGATATATCA
    TAATCAAGTG GTTAGTTTTG TTTGTTCCCT TTGTTAGCTG TGTACTGGAG
    AAAGAAAGGT GACAAGAATT CTTCTTCTTC TTCATTAATT TTCATTGCTT
    GC

    Gene models with high sequence identity

    1. AT4G38520.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 0; Score: 99.74

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein phosphatase 2C, N-terminal 9.3e-46
    superfamily Protein phosphatase 2C-related 9e-59
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    HMMSmart Protein phosphatase 2C-related 2e-89
    Gene3D Protein phosphatase 2C-related 9.7e-59
    HMMPanther PROTEIN PHOSPHATASE-2C 4.5e-183
    HMMPanther Protein phosphatase 2C 4.5e-183

    See the detailed result >

    AT4G38520.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G66080.1); Has 5534 Blast hits to 5531 proteins in 297 species: Archae - 0; Bacteria - 21; Metazoa - 1498; Fungi - 573; Plants - 2468; Viruses - 5; Other Eukaryotes - 969 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR