F09227

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09227

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09227

Determination of introduced cDNA(s)

RAFL08-08-E04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-08-E04 - Resource: pda04484

full reading [+] show sequence

AAGAGGAAGA GAGACTCAAA ACGGCAATTA GCGAAAGTGG GCGGGAGGAT 
TCTTTTCCGG CGACTCTTTT ATGTCTTCTC TTCCTCTTCG CTCCGGTGAG 
AAGATGGAAT CGCCTTCCAT CTCCGACGCC GTTCCACTTC ACGCACCAGA 
AGACGCGACC GCGGATTTTT CCCAACCGCA ATCGCCGTTA CATGAAGTTG 
ATTCGTTTCC AGTTACTGAA TCCTCCGATG ATGTTGTTGT TAACGTCTCG 
GAGATACCGA ATTTATCTCC GTCTGATGAT GATTTTGACC ACGAGCGAAA 
TAGCGGCGAG GATCGCGATC AGGATCACGG CGAGAATCCG GTTGAGACCG 
ATGGTGTTGT TGTTCCAATC GATGAGTTGA ATCAGAAGAT CATTAGACAG 
GTTGAATACT ACTTTAGTGA CGAGAATTTG CCTACTGACA AATTTCTTCT 
GAATGCAATG AAGAGAAACA AAAAAGGCTT TGTTCCTATT TCTACCATTG 
CTACGTTCCA CAAAATGAAG AAGCTTACTC GAGATCATGC TTTGATAGTA 
TCAGCCTTAA AGGAGTCATC GTTTCTTGTT GTTAGCGCTG ATGAGAAGAA 
GGTGAAGCGG CTGAGTCCTC TTCCTGAGAT CAGAGATCCA AAGATTTTCA 
CTGTTTTGGT AGAAAATTTG CCAGAGGATC ATTCAAATGA GAATATTCGA 
GAGATATTTG GTAAAGCTGG AAGTATTAAA AGTGTATCCA TATGTGATCC 
AAATGCTGTT GAAGAATCAG AGAAGGGTGG GAAGAAGGAA AATTTCATCA 
GAACCAGATT ACATGCCTTT GTGGAGTATG AAACGGTGGA GGCAGCTGAA 
AAAGCGGCAG CTACATTGAA TAATGAGCAA GACTGGAGAA ATGGGTTGCG 
AGTTAAGCTT CTTGAACAAG CAGCAGGAAA GTTTGCACAG AGAAGACCAG 
CTCGGAGGGA AGTCGATAAA GAAAAGGACA CTACAGGCAG AGTTCATGAT 
CAAACTGGAG GAGAGAAAAA CAAAAAGACG CGTGAACATC AAAATCACCG 
TCTCCATCAT TCTGATAATC CTGCTGATGA TGACGGTGGC AATCATCAGA 
AGGATAAAAA TGGAAACAAA GGCAGAGTTG TAGGACAAGG AAGACGACAG 
AATCATCAAG GCGGCAACGG CATTGGACAT GGAACAGCTT CATCATCTTC 
TCATCCTAAT TATCATCCTG TTGAGGTCTC AAAGCGTCCA CCTGGCCCGA 
GAATGCCTGA TGGGACGAGA GGGTTCACAA TGGGGCGTGG TAAAGCGATT 
CCTCCTCCCA CATCTACTCA AACCAGTCAT GAAGTTTGAT CGGTTCCGCA 
TCTTCGGTTG TATCATTGTG TGGTTTTATT TCACATTAAA AAATGTGAAA 
CTTGTATGTA ATTAGAATTG AGATGTTGTT TTGGATTTGG GTTTCCTTTT 
GGCATATTCA AGTCCTCCAA ATCTTCACTT TGGTAATTAG TTTTGTGTTG 
TAAGTTTTGG TGAATGAAAA AATGATCCTT TTGATAAACT TATAAAATAA 
CACTTATC

Gene models with high sequence identity

AT5G46250.1 [+] show detail - RNA-binding protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	"Winged helix" DNA-binding domain	1.3e-32
superfamily	RNA-binding domain, RBD	1.1e-12
HMMSmart	RNA-binding protein Lupus La	1.7e-46
HMMSmart	RNA recognition motif, RNP-1	3.1e-06
HMMPfam	RNA-binding protein Lupus La	3.7e-27
HMMPfam	RNA recognition motif, RNP-1	7.5e-10
HMMPanther	RNA-BINDING PROTEIN	3.6e-92
HMMPanther	LUPUS LA PROTEIN-RELATED	3.6e-92
Gene3D	Winged helix-turn-helix transcription repressor DNA-binding	4.2e-30
Gene3D	Nucleotide-binding, alpha-beta plait	3.9e-08
ProfileScan	RNA recognition motif, RNP-1	12.185
ProfileScan	RNA-binding protein Lupus La	28.638
FPrintScan	Lupus La protein	2.8e-13
FPrintScan	Lupus La protein	2.8e-13
FPrintScan	Lupus La protein	2.8e-13
FPrintScan	Lupus La protein	2.8e-13

See the detailed result >

AT5G46250.1

Model type: Protein coding
Short Description: RNA-binding protein
Computational Description: RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 1603 Blast hits to 1601 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 875; Fungi - 249; Plants - 311; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Link: InterPro Scan - TAIR