F09337

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09337

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09337

Determination of introduced cDNA(s)

  • RAFL06-82-C22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-C22 - Resource: pda03822

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-C22 - full reading 
    AATCTCTCTA TATATAAATT CCTCTGTCTT TCAAGTTTCA GAGCAACTTT 
    CTGTAGATCT ATCACACGCC TTGACCCTCT CATCCAACGG TCATTATTCA 
    CTCCAAACCC ACTCTGCTTC TTCTTCTTCC AAACATCTCT CAGCAGAGCT 
    AACCATCTCT CTTTTGTAAT GGCTTCACTT ATTTCCCTTG TTCTTCTTCT 
    TTTGCTCACT TTATCTTCAG CAGAGTCCAA GACTTTCTGG GGTGACGTGG 
    CAGCTCTCAA AGACTTCAAG AACTCAGTGG ATGCCAAATC CATGAGTCCA 
    GGCTCTTGCC TGAGTTCTTG GGATTTCTCC GTCGATCCCT GCGACAATAT 
    ATTCAGCGAC ACATTCACTT GTGGGTTCCG CTGCGACTCC GTCGTTACCG 
    GATCGGGTCG GGTCACGGAG CTCAGTCTGG ACCAAGCCGG TTACTCAGGC 
    TCCCTCTCCT CCGTCTCTTT CAACCTTCCT TATCTCCAGA CCCTCGATCT 
    CTCCGGCAAC TACTTCTCCG GTCCACTTCC CGACTCGCTC TCCAATCTCA 
    CCCGTCTCAC CCGCCTCACT GTGTCCGGAA ACTCCTTTTC CGGATCCATA 
    CCCGATTCAG TCGGGTCAAT GACGGTTCTT GAGGAGCTCG TGCTAGACAG 
    CAACCGCCTC TACGGCTCCA TTCCGGCGAG CTTCAATGGC CTTTCCAGCC 
    TGAAACGACT GGAAATCCAG CTAAACAACA TCTCCGGCGA ATTCCCTGAT 
    CTGAGCTCAC TCAAAAACCT GTATTACCTC GACGCGAGCG ATAACCGCAT 
    CTCCGGTCGG ATCCCATCAT TTTTACCCGA ATCTATAGTC CAAATCTCAA 
    TGCGAAACAA CCTCTTCCAA GGAACGATCC CTGAAAGCTT CAAACTTCTA 
    AATTCTCTCG AAGTAATCGA TCTTAGCCAC AACAAACTCA GTGGCTCAAT 
    CCCATCGTTT ATCTTCACTC ATCAGTCTCT ACAGCAGCTA ACACTCTCCT 
    TCAATGGCTT CACCTCTTTA GAGTCACCCT ACTATTCTCC CTTGGGTCTC 
    CCCAGCGAGC TCATATCCGT AGATCTCAGC AACAATCAGA TCCTCGGTGC 
    GTTACCTCTG TTCATGGGTC TATCACCAAA GCTCTCAGCA TTGTCGTTAG 
    AGAACAACAA GTTCTTTGGT ATGATTCCGA CCCAGTACGT CTGGAAAACC 
    GTATCGCCCG GATCCGAATT CGCCGGGTTT CAGAGACTTT TACTAGGCGG 
    AAATTTCTTA TTCGGAGTCG TACCGGGTCC TTTGATGGCG TTAAAGCCTG 
    GATCAGCGAA CGTGCAGCTC GCCGGAAACT GCTTCTCATG GTGTCCGGCG 
    ACGTTATTCT TCTGCCAAGG ACAAGAACAG AGATCTCCGA AGGAATGTAG 
    AAAGTTTAGC CGCGTCGTCC CGTAATCTTC TCTTTCCTTG TTAGTATCCG 
    GTCCGGTCGA GTTTTTCCGG CAATTGCTTA ACCCGATAAT TGCATCGGTT 
    AAATTGTGAT TAATTTAATA AAATTGCCGT TTGGAGAGAT AAAAAAAAAA 
    AAAAAA

    Gene models with high sequence identity

    1. AT5G66330.1 [+] show detail - Leucine-rich repeat (LRR) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.1e-42
    HMMPfam Leucine-rich repeat 0.0055
    HMMPfam Leucine-rich repeat 0.019
    FPrintScan Toll-like receptor, leucine rich repeat-containing 5.3e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 5.3e-05
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.3e-51
    superfamily L domain-like 2.8e-58

    See the detailed result >

    AT5G66330.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat (LRR) family protein
    Computational Description
    Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR