F09410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09410

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::light green

Original: F09410

Determination of introduced cDNA(s)

RAFL06-82-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-K21 - Resource: pda03837

full reading [+] show sequence

AAAGTAAAGA AACAATGGCG TATTCTCTTC CTACATTTCC CCAAGCCTTA 
CCTTGCTCGT CAACCAAAAC TTCTTCCTCC TTGGCTACCT TCCGATCTCC 
TTTCTTAAGA TTCAATGGTT CCACTTCCTT AATCCCCTCC TCTATCTCCA 
TCACTTCACG TGGCACATCC TCCCCGACCA TCATCCCACG TGCTGCCGCC 
TCAGAATCCG ACTCTAACGA AGCCCTAGCC AACACAACCT TCCACGGCCT 
CTGCTATGTC TTGAAAGACA ACATAGACAC CGACCAGATC ATCCCAGCAG 
GAGCCGCTTG CACCTTCCCA TCGAACCAGC AAGAGCGTGA TGAGATCGCC 
GCTCACGCTC TCTCTGGTCT ACCAGACTTC CACAAAACAC GGTTCATTGA 
GCCAGGAGAG AACAGATCAA AGTACTCAAT CATAATCGGC GGCGAAAACT 
TTGGTTGCGG ATCGTCACGT GAACATGCTC CGGTCTGTCT TGGAGCAGCT 
GGAGCTAAAG CCATAGTTGC TGAGTCTTAC GCAAGAATCT TTTTCCGTAA 
CTCGGTTGCT ACAGGAGAGG TGTTTCCGCT CGAGTCAGAG GTTAGAGTCT 
GTGAGGAGTG TAAGACAGGA GATACGGTGA CGATCGAGCT GAGTGATAGT 
GGTGGTTTAT TGACTAATCA CACGACCGGT AAAAACTATA AGCTGAAGTC 
GATCGGTGAT GCTGGACCGG TTATTGATGC TGGTGGTATT TTTGCTTATG 
CGAGGATGAT GGGAATGATT CCATCATTAG CTTAATCCTC TTCCATAACC 
ATGATGGTGT TCTTGTATGC ATAACTATTT GATGAATATT TGTGTTTTAG 
AGTTTTCTAT TTTCTTAACT TTTTTATGTT TGTTTGATTT GGTATTGTTG 
TTGTTACCTA AAGAATAAGA AATCAAAAGC AAAATAGACC GACATGTTCC 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

AT2G43100.1 [+] show detail - isopropylmalate isomerase 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	9.3e-34
HMMPfam	Aconitase A/isopropylmalate dehydratase small subunit, swivel	2.6e-18
Gene3D	Aconitase/3-isopropylmalate dehydratase, swivel	3e-27
HMMPanther	3-isopropylmalate dehydratase, small subunit-like	2.2e-51
HMMPanther	Aconitase-like core	2.2e-51

See the detailed result >

AT2G43100.1

Model type: Protein coding
Short Description: isopropylmalate isomerase 2
Computational Description: isopropylmalate isomerase 2 (IPMI2); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8735 Blast hits to 8734 proteins in 2248 species: Archae - 359; Bacteria - 5628; Metazoa - 12; Fungi - 337; Plants - 71; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).
Link: InterPro Scan - TAIR