F09647

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09647

Determination of introduced cDNA(s)

RAFL04-16-G24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-G24 - Resource: pda02325

full reading [+] show sequence

ATTTTGTCTT AACGACTCTT TATTGTCCCG ACACACGAAA ATGGCGTCTC 
TTAGCCAAAT CACCCTGCCA CGCGCGCCGT CGTCGGAGAT TGGCCTCTTA 
CGCCGTCGAT TGGAGCGGCC GATCATCAGA ACCCGGATCG GATTCAACGG 
CCGGATTGCG AGCGTATTGA CTAACGCAGG GGACCAAGCG GTGTCGGTAA 
AAGCGAGTGT GAGCCAGAAG GTGATTGAAG AGGAAGCCAA AGTTATTGTG 
GGTACCTACG CGCGAGCTCC AGTGGTTCTC TCGAGTGGGA AAGGTTGTAA 
ATTGTTCGAC CCTGAAGGAA AAGAGTATCT GGATTGTGCA TCTGGAATCG 
CTGTGAATGC TCTTGGTCAT GGAGATCCTG ATTGGCTTCG AGCTGTCACT 
GAGCAAGCTG GTGTTCTTGC CCATGTCAGC AATGTTTATT ACACGATCCC 
TCAGATAGAG CTCGCAAAAC GCTTGGTGGC GAGTTCTTTT GCAGACCGTG 
TATTCTTTTG TAACTCGGGA ACGGAAGCCA ATGAAGCAGC CATTAAGTTT 
TCAAGAAAAT TCCAGAGATT CACCCATCCA GAAGACAAAG AAGTCGCGAC 
AGGTTTCATC GCCTTTACAA ACAGCTTCCA TGGAAGAACC TTAGGAGCTC 
TTGCCTTGAC AAGCAAAGAA CAATACAGAA CTCCTTTCGA ACCCATCATG 
CCTGGTGTAA CCTTCTTAGA ATATGGTAAC ATTCAAGCAG CCACAGACCT 
TATCCGCTCA GGTAAAATAG CTGCAGTTTT TGTGGAACCA ATTCAAGGAG 
AAGGCGGGAT TTACTCTGCT ACAAAAGAGT TTCTGCAATC TCTGCGCTCT 
GCTTGTGATG CCGCTGGATC TCTTCTCGTC TTCGATGAGG TTCAATGTGG 
TTTGGGTCGA ACGGGTCTCA TGTGGGCTTA TGAAGCCTTC GGTGTGACTC 
CTGACATAAT GACGGTTGCA AAGCCTTTAG CTGGTGGTTT ACCTATTGGA 
GCGGTGCTGG TGACTGAAAA GGTTGCAGAG ACCATAAACT ACGGAGATCA 
TGGAAGTACA TTTGCAGGCA GCCCTCTTGT GTGCAGTGCA GCCATTGCAG 
TTATGGATAA AGTATCGAAA CCCTCTTTCT TGTCCAGTGT CTCAAATAAA 
GGTCGATACT TTAGAGACCT GTTGGTGAAA AAACTTGGAG GAAACTCGCA 
CGTGAAGGAA GTGAGAGGCG AAGGGCTTAT CATAGGAGTG GAGCTCGATG 
TGCCGGCAAG CTCACTGGTT GATGCTTGCC GAGATTCGGG TCTTCTGATC 
TTGACAGCGG GGAAAGGAAA TGTCGTCAGG ATTGTTCCTC CGTTGGTTAT 
ATCAGAGGAG GAAATCGAAC GTGCGGTTGA GATCATGTCT CAAAATTTGA 
CTGCGCTTGA TTGAAGTTCT TGGAAGAGAA ATGATGTGGT GTTGAAGAAG 
AGCTAATGTT TTATATTCGA TCTTGTCTTA AATTAGCCTC AAGTGTACCG 
GTAAAGATGC TCTGCACAAT TGAAAAGAAA TAAAATTTGA CACAAAACTT 
GATGAACTAA TTGTTCAATC T

Gene models with high sequence identity

AT1G80600.1 [+] show detail - HOPW1-1-interacting 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Aminotransferase class-III	0
superfamily	Pyridoxal phosphate-dependent transferase, major domain	1e-125
HMMTigr	Acetylornithine/succinylornithine aminotransferase	7.9e-182
HMMPfam	Aminotransferase class-III	3.3e-99
HMMPanther	Acetylornithine/succinylornithine aminotransferase	6.1e-206
HMMPanther	Aminotransferase class-III	6.1e-206
HAMAP	ARGD_MF_01107	43.721
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	7e-07
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	8.3e-78

See the detailed result >

AT1G80600.1

Model type: Protein coding
Short Description: HOPW1-1-interacting 1
Curator Summary: Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).
Computational Description: HOPW1-1-interacting 1 (WIN1); FUNCTIONS IN: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity, copper ion binding; INVOLVED IN: defense response to bacterium; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Acetylornithine/succinylornithine aminotransferase (InterPro:IPR004636), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ornithine-delta-aminotransferase (TAIR:AT5G46180.1); Has 36928 Blast hits to 36904 proteins in 2775 species: Archae - 735; Bacteria - 23598; Metazoa - 655; Fungi - 914; Plants - 410; Viruses - 17; Other Eukaryotes - 10599 (source: NCBI BLink).
Link: InterPro Scan - TAIR