F09820

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09820

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09820

Determination of introduced cDNA(s)

  • RAFL11-11-G19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-11-G19 - Resource: pda17988

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-11-G19 - full reading
    CCGGGCTTGC GTGATCTCTC TCTTCTCTTC TCTCTCTCAC TCATCCAAAT 
    CTTTGATCAT CTCATCATCA TTGGACTTGA AGCTAACTCC AGAGTTTTAT
    CCAGATTCAT CATTTTCCAA CGTTTTTCTT CAATCGAATC ATCAGCGAGT
    TTGGTTCCGA CGACGATCTT AGTAGCTTCA TAAGCTCAAG ATTCTTCAGG
    TTTCGGTGGA TTTTCTTGAG CTCTTCTAAG CTTCTCCATT TTGTGAGCCT
    CCGATTTCGA ACCTGGTAGT GTTGTGGATC TCACTGGACC ACGAAGCTTT
    CTTCACTGAG CTAAGCTTGA AGTCAATTCC TCTGTTCGAC AATCAATAGA
    GGAAGATGAA TTATTTCCCA GACGAGGTTA TAGAGCACGT GTTTGACTTC
    GTAGCTTCTC ACAAAGACAG GAACTCGATA TCTCTGGTCT GCAAATCATG
    GCACAAGATC GAGAGGTTTA GTAGGAAGGA AGTGTTCATC GGAAACTGCT
    ACGCGATTAA CCCGGAGAGG TTGATCAGGA GGTTTCCATG TCTCAAATCC
    TTAACTTTAA AAGGGAAGCC TCATTTTGCA GACTTCAACT TGGTTCCTCA
    TGAATGGGGA GGTTTCGTGC ATCCTTGGAT TGAAGCTTTG GCTAGAAGCC
    GTGTGGGACT TGAGGAGCTG AGGTTGAAGC GGATGGTTGT AACAGATGAA
    AGCTTGGACC TTCTTTCACG TTCTTTTGCA AATTTCAAGT CTTTGGTTCT
    TGTTAGCTGT GAAGGGTTTA CCACTGATGG CTTAGCTTCC ATTGCCGCTA
    ATTGCAGGCA TCTTCGTGAG CTGGACTTGC AAGAGAATGA GATTGATGAT
    CATAGAGGTC AATGGCTGAA CTGTTTTCCA GATAGCTGCA CTACTCTTAT
    GTCGTTGAAT TTCGCTTGCC TTAAAGGAGA GACCAATGTT GCTGCTTTAG
    AAAGGCTTGT TGCTAGGTCA CCAAACCTGA AGAGCTTGAA GTTAAACCGT
    GCAGTACCGC TTGACGCACT CGCAAGGTTA ATGAGTTGTG CGCCGCAGCT
    AGTGGACTTA GGAGTAGGGT CTTATGAGAA TGAGCCAGAT CCTGAATCTT
    TTGCAAAACT CATGACTGCC ATTAAGAAAT ACACATCGTT AAGGAGCTTG
    TCTGGCTTTT TAGAGGTTGC TCCACTCTGC CTCCCAGCGT TCTACCCAAT
    TTGCCAAAAC CTTATCTCTT TGAACCTCAG CTATGCAGCT GAAATCCAAG
    GCAACCACCT CATTAAGCTT ATTCAGCTTT GCAAGAGACT TCAACGATTA
    TGGATATTGG ATAGTATTGG TGACAAAGGA CTTGCGGTTG TCGCTGCCAC
    ATGTAAAGAG TTACAAGAGC TTAGAGTTTT TCCCTCTGAT GTACATGGTG
    AAGAAGATAA CAACGCATCT GTGACTGAGG TTGGACTAGT CGCCATTTCC
    GCAGGTTGCC CTAAACTTCA TTCGATTCTG TACTTCTGCA AACAGATGAC
    AAACGCAGCG CTCATAGCCG TGGCCAAAAA CTGTCCAAAC TTCATCCGGT
    TCAGGCTATG CATTCTCGAG CCACACAAAC CTGACCACAT TACATTTCAA
    TCACTGGACG AGGGCTTTGG TGCAATCGTA CAAGCTTGCA AGGGTCTAAG
    ACGGCTCTCT GTCTCCGGTC TCTTAACCGA TCAAGTCTTT CTCTACATCG
    GTATGTACGC GGAACAGCTC GAGATGCTTT CGATAGCTTT TGCGGGGGAC
    ACTGACAAAG GAATGCTCTA TGTGTTGAAT GGATGCAAAA AAATGAGGAA
    GCTGGAGATA AGGGACAGTC CTTTTGGGAA CGCTGCGCTT CTTGCTGACG
    TGGGTAGGTA CGAAACAATG CGATCCCTTT GGATGTCGTC TTGTGAAGTA
    ACACTCGGTG GCTGCAAGAG GCTCGCGCAG AATTCGCCAC GGCTTAACGT
    AGAGATCATC AACGAGAATG AGAATAATGG GATGGAACAG AATGAAGAAG
    ATGAAAGAGA GAAGGTTGAT AAACTTTACC TCTACCGAAC AGTGGTTGGG
    ACTAGAAAAG ATGCACCACC ATATGTTAGG ATTCTTTAGT CTCTTTGCAC
    CTTCATGTGT TTTCAAACTT TTCTTTGTAC TAGTTTTTGC CTTTTATCAA
    ACTTGGAACA AAAAAA

    Gene models with high sequence identity

    1. AT1G12820.1 [+] show detail - auxin signaling F-box 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.6e-29
    Gene3D no description 2.3e-14
    HMMSmart F-box domain, cyclin-like 0.0001
    HMMPanther GRR1-RELATED, ARATH 3.6e-280
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 3.6e-280
    superfamily RNI-like 3.3e-29

    See the detailed result >

    AT1G12820.1

    Model type
    Protein coding
    Short Description
    auxin signaling F-box 3
    Curator Summary
    Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots.
    Computational Description
    auxin signaling F-box 3 (AFB3); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: auxin signaling F-box 2 (TAIR:AT3G26810.1); Has 2450 Blast hits to 1661 proteins in 170 species: Archae - 0; Bacteria - 4; Metazoa - 823; Fungi - 153; Plants - 1347; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR