F09914

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09914

Determination of introduced cDNA(s)

RAFL15-21-G20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-21-G20 - Resource: pda12884

full reading [+] show sequence

GGAGATCTTT AATCTCAGAA TACAAAAAAG AAAATCAAAG AAGATAGTTT 
TGTGATTGTT TTCTATAAAA AGTGCAGATA TTTTCTTTGT CCTAGAGAAA 
GAGGTGATAG GAAAAATGGG TCTCCAAGAG CTTGACCCGT TAGCCCAATT 
GAGCTTACCG CCGGGTTTTC GGTTTTATCC GACTGACGAA GAGCTGATGG 
TTGAATATCT CTGTAGAAAA GCCGCCGGTC ACGACTTCTC TCTCCAGCTC 
ATAGCTGAAA TCGATCTCTA CAAGTTTGAT CCATGGGTTT TACCAAGTAA 
GGCGTTATTC GGTGAAAAAG AATGGTATTT TTTCAGCCCG AGGGATAGGA 
AGTATCCAAA CGGGTCAAGA CCTAATCGGG TTGCCGGGTC GGGTTATTGG 
TAAGCCACCG GTACGGATAA AGTTATCTCG ACGGAGGGAA GAAGAGTTGG 
TATCAAGAAA GCTTTGGTGT TTTACATTGG AAAAGCTCCA AAAGGAACCA 
AAACCAATTG GATTATGCAT GAGTACCGTC TCATCGAACC CTCTCGTCGA 
AATGGAAGCA CCAAGCTTGA TGATTGGGTT TTATGTCGAA TATACAAAAA 
GCAAACAAGC GCACAAAAAC AAGCTTACAA TAATCTAATG ACGAGTGGTC 
GTGAATACAG CAACAATGGT TCGTCGACAT CTTCTTCGTC TCATCAATAC 
GACGACGTTC TCGAGTCGTT GCATGAGATT GACAACAGAA GTTTGGGGTT 
TGCCGCCGGT TCATCAAACG CGCTGCCTCA TAGTCATAGA CCGGTTTTAA 
CCAATCATAA AACCGGGTTT CAGGGTTTAG CCAGGGAGCC AAGTTTTGAT 
TGGGCGAATT TGATTGGACA GAACTCGGTC CCGGAACTCG GACTGAGTCA 
TAACGTTCCG AGTATTCGTT ACGGTGACGG TGGAACGCAG CAACAAACTG 
AGGGGATTCC TCGGTTTAAT AATAACTCGG ACGTCTCGGC TAATCAGGGT 
TTTAGTGTTG ACCCGGTTAA CGGATTTGGG TACTCGGGTC AACAATCTAG 
TGGGTTCGGG TTTATTTGAT TGTGTAATGG TAACGTAATA AGAAAAACAT 
ATTTTTATTT TTTGTCCGTG TCAGATTAGT TAATTAATAT AGCGTAGAAT 
TCGAACTCTA GGGTTAGATT TAGGTTCTAC GACTTGTATT GTATATTCGT 
CGTCAAGAAA AAAAAAAAAA AA

Gene models with high sequence identity

AT3G15500.1 [+] show detail - NAC domain containing protein 3
E-value: 0; Score: 99.92

InterPro Scan Digest

Program	Description	E-value
ProfileScan	No apical meristem (NAM) protein	35.783
ProfileScan	No apical meristem (NAM) protein	25.772
HMMPfam	No apical meristem (NAM) protein	4.7e-29
HMMPfam	No apical meristem (NAM) protein	7.6e-13
superfamily	No apical meristem (NAM) protein	4.4e-36
superfamily	No apical meristem (NAM) protein	3.5e-25

See the detailed result >

AT3G15500.1

Model type: Protein coding
Short Description: NAC domain containing protein 3
Curator Summary: Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3.
Computational Description: NAC domain containing protein 3 (NAC3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus, jasmonic acid mediated signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 19 (TAIR:AT1G52890.1); Has 3043 Blast hits to 3035 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR