F09944

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	stem (PO:0009047)	dark green (PATO:0001249) (Stem::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09944

Determination of introduced cDNA(s)

RAFL05-02-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-H10 - Resource: pda02419

full reading [+] show sequence

ATCTTCTTCT TCCCCCTTCC TCTCTCAGCT TCTCTCCCAC CACTAAGGAG 
GAACGTTCCA AAGATCCCTT TCTCAGAGAA TTCCCAGAAA AATCTTCAAC 
AATTGAAACC CTAATGGAGA ATCATTCGGA TCCTTGAATC CTTTGGTTTG 
TCTCTCACCT CCATTTCTGA AATTTCATTG CTTTGTGATT CTTCTGCAGA 
TTCGTTTTGA AGAGAAGAAA GAAATGTCAT CGAACACTTC ACGAAGCTGT 
TCTACTAGAT CTAGACAAAA CTCTCGAGTT TCTTCACAAG TTCTCGTCGA 
CGCAAAGCTA CACGGAAACT TCGAAGAATC TGAGCGTTTA TTTGACTATT 
CAGCTTCAAT AAACTTGAAC ATGCCAAGTT CTTCCTGTGA GATTCCTTCT 
TCAGCTGTCT CAACGTACTT ACAGAAGATT CAGAGAGGGA TGTTGATTCA 
ACCCTTTGGT TGTTTAATCG TTGTTGATGA GAAAAACCTT AAAGTCATTG 
CCTTTAGTGA AAACACTCAA GAGATGTTGG GTTTGATTCC ACATACAGTA 
CCAAGTATGG AGCAGCGTGA AGCTTTGACT ATAGGAACTG ATGTGAAATC 
ATTGTTTCTG TCTCCAGGTT GTTCTGCTTT GGAGAAAGCT GTTGACTTTG 
GTGAGATTAG TATTTTGAAT CCTATCACGC TTCATTGTAG GTCTTCAAGT 
AAGCCTTTTT ATGCGATTCT GCATCGGATT GAGGAAGGTC TTGTTATAGA 
TTTGGAGCCT GTGAGTCCTG ATGAGGTGCC TGTGACTGCT GCCGGGGCTT 
TAAGATCGTA TAAGCTTGCG GCGAAATCGA TTTCGAGGTT GCAGGCATTG 
CCTAGTGGGA ATATGTTGTT GTTGTGTGAT GCTTTGGTTA AGGAAGTTAG 
TGAATTAACT GGTTATGATA GGGTGATGGT GTATAAGTTC CATGAGGATG 
GGCATGGGGA AGTGATTGCT GAATGCTGCC GGGAAGATAT GGAACCTTAT 
CTTGGGTTGC ATTACTCCGC TACTGATATA CCGCAAGCTT CGAGATTTCT 
GTTTATGAGA AACAAGGTTA GGATGATTTG TGATTGTTCA GCGGTTCCGG 
TTAAAGTCGT TCAAGATAAG AGTCTCTCAC AGCCAATAAG TCTTTCTGGA 
TCTACTTTGA GAGCTCCTCA TGGTTGTCAC GCACAGTATA TGAGTAATAT 
GGGATCAGTG GCGTCTCTTG TCATGTCTGT AACTATCAAT GGTAGTGATA 
GTGATGAGAT GAACAGAGAT TTACAGACTG GCAGACACTT ATGGGGCTTG 
GTGGTTTGTC ATCACGCAAG TCCTAGATTT GTTCCGTTTC CATTACGATA 
TGCTTGTGAA TTCTTGACTC AAGTATTTGG CGTGCAGATC AACAAAGAAG 
CGGAATCAGC TGTTCTGTTG AAAGAGAAGC GTATTTTGCA AACTCAGAGT 
GTGCTATGTG ACATGCTTTT CCGCAATGCA CCAATAGGTA TAGTCACTCA 
ATCACCAAAT ATAATGGATC TTGTTAAATG TGATGGAGCA GCATTATATT 
ACAGAGACAA CCTCTGGTCT CTAGGAGTTA CTCCCACAGA GACACAAATT 
AGAGATCTAA TTGACTGGGT TCTCAAAAGT CATGGAGGAA ACACTGGCTT 
TACCACTGAA AGTCTAATGG AGTCTGGCTA TCCGGATGCT TCTGTTCTTG 
GGGAGTCAAT ATGTGGAATG GCTGCCGTAT ATATTTCCGA AAAAGATTTC 
CTTTTCTGGT TCCGGTCTAG CACTGCAAAA CAGATCAAGT GGGGTGGTGC 
AAGACACGAT CCTAATGACA GAGATGGTAA GAGAATGCAT CCTAGATCCT 
CATTCAAGGC TTTTATGGAA ATAGTCAGGT GGAAAAGTGT GCCCTGGGAT 
GACATGGAAA TGGATGCAAT TAATTCTCTG CAGCTAATAA TAAAAGGCTC 
ATTGCAAGAG GAGCATTCAA AGACTGTTGT GGATGTCCCA CTTGTGGATA 
ATAGGGTTCA GAAGGTAGAT GAATTGTGTG TTATCGTGAA TGAAATGGTG 
CGGTTGATTG ATACAGCAGC TGTTCCCATC TTTGCGGTTG ATGCCTCTGG 
TGTTATAAAT GGTTGGAATT CTAAAGCGGC TGAGGTAACA GGATTGGCAG 
TTGAACAAGC AATAGGCAAA CCTGTATCAG ATCTCGTTGA GGACGATTCT 
GTAGAAACCG TGAAGAACAT GTTAGCCTTG GCTCTCGAAG GTAGTGAAGA 
ACGTGGTGCT GAGATCAGGA TCAGAGCATT TGGTCCTAAA AGGAAAAGCA 
GTCCGGTTGA GTTAGTTGTC AACACTTGTT GTAGCAGAGA TATGACGAAT 
AATGTTCTTG GTGTATGCTT CATTGGACAA GATGTTACAG GCCAGAAAAC 
GCTTACTGAA AACTATAGCC GCGTGAAAGG AGATTATGCC CGAATCATGT 
GGAGCCCTTC CACACTCATT CCACCAATTT TTATAACCAA TGAAAATGGG 
GTATGCTCAG AGTGGAACAA CGCAATGCAG AAGCTCTCTG GGATAAAGAG 
AGAAGAAGTT GTCAATAAAA TTCTTCTCGG GGAGGTTTTT ACCACAGATG 
ATTATGGTTG CTGCCTTAAA GACCATGACA CTTTAACGAA GCTGAGAATA 
GGTTTCAATG CTGTGATTTC TGGCCAAAAG AACATAGAGA AGCTTTTATT 
TGGCTTTTAC CATCGTGATG GTAGCTTCAT CGAGGCATTG CTTTCTGCAA 
ACAAAAGGAC TGATATTGAG GGAAAGGTTA CCGGGGTTTT ATGCTTTTTG 
CAAGTACCTA GTCCAGAACT CCAATATGCT CTACAGGTTC AGCAAATATC 
AGAGCATGCA ATTGCCTGTG CCCTCAACAA ATTGGCATAT CTCCGCCATG 
AAGTGAAGGA CCCCGAAAAG GCAATATCCT TCCTTCAAGA TTTGCTCCAT 
TCATCTGGAT TAAGTGAAGA CCAAAAGCGG CTCCTGAGGA CAAGCGTTTT 
ATGCAGGGAG CAGTTAGCCA AAGTCATAAG CGACTCAGAC ATAGAGGGAA 
TCGAAGAAGG CTATGTGGAA CTGGATTGCA GCGAATTCGG CCTGCAGGAA 
TCCCTGGAAG CAGTTGTAAA ACAAGTGATG GAGCTGAGCA TAGAACGTAA 
AGTACAAATC AGCTGCGATT ATCCTCAAGA AGTTTCATCA ATGAGATTGT 
ATGGAGACAA CTTAAGGCTT CAGCAAATCC TTTCAGAGAC ACTATTAAGC 
AGCATACGCT TCACGCCTGC ATTGAGAGGA TTGTGTGTCT CATTCAAGGT 
AATTGCACGG ATAGAAGCTA TAGG

Gene models with high sequence identity

AT5G35840.1 [+] show detail - phytochrome C
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Phytochrome chromophore binding site	0
HMMTigr	PAS	1.8e-11
superfamily	PYP-like sensor domain (PAS domain)	2.9e-17
superfamily	PYP-like sensor domain (PAS domain)	1.3e-11
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
FPrintScan	Phytochrome	2.1e-99
HMMSmart	GAF	1.5e-09
HMMSmart	PAS	6.4e-09
HMMSmart	PAS	0.14
HMMSmart	PAC motif	0.0022
ProfileScan	Phytochrome chromophore attachment domain	66.417
ProfileScan	Signal transduction histidine kinase, core	20.251
ProfileScan	PAS	18.956
ProfileScan	PAS	13.677
Gene3D	no description	4.9e-11
HMMPanther	PHYTOCHROME C	0
HMMPanther	SENSOR HISTIDINE KINASE-RELATED	0
HMMPfam	Phytochrome, central region	6.1e-66
HMMPfam	PAS fold	2.3e-25
HMMPfam	PAS fold	7e-26
HMMPfam	PAS fold-2	2.4e-40
HMMPfam	GAF	8.5e-39

See the detailed result >

AT5G35840.1

Model type: Protein coding
Short Description: phytochrome C
Curator Summary: Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.
Computational Description: phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR