F10022

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10022

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10022

Determination of introduced cDNA(s)

  • RAFL04-15-D12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-D12 - Resource: pda00344

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-D12 - full reading 
    ACACCTAATC TTCATCTTCA TCTTCGCATT CATAGTCTCT ACGATCAGAT 
    AGATAAAAGA AGTCAACAAC GATGTCTTGG GACGATGGAT CACACGCAAA 
    GGTGAAGAAA GTGCAGCTAA CCTTCGATGA GATCATCTAC TCAATCCAGG 
    TCACGTACGA CGGAGCCACC GCTCTTCAAT CCCAGCTTCG CGGCTCCGTT 
    GGTCCCAAAT CTGCTGAGTT CACTTTGGCT CCGGACGAGT ACATAACGGC 
    CCTTTCTGCT TACGGCAAAT CGTTGAGTAC GCAAGAAGTT ATTACGGCGT 
    TGACTTTCAC AACCAACAAG ACTTCTTATG GACCTTACGG TACCAAATCC 
    GGTTTCCAGA TTTCTGCTCC GGAAGCCACC GGTAAACAGA TCTCCGGTTT 
    CCTTGGTACC AGCGGCAATG TTCTCAACAC CATCGACGTT CACTATTCTC 
    CCATACCTAC TGGAGGAACT GGCACCGGAG GAACTGGCAC CGGAACTGGC 
    ACCGGAACTG GCACTGGAAC TGGCACTGGC ACCGGAACTG GCACTGGAAC 
    TGGCACTGGA ACTGGCACCG GAGGAACTGG CACTGGAACT GGCACCGGTA 
    CTGGAGGAAC TGGCACTGGA ACTGGCACCG GAGGAACTGG CACTGGAACC 
    GGCACTGGGA CTGGCACTGG AACCGGCACT GGGACTGGCA CTGGAACCGG 
    CACCGGAGGA ACTGGCACTG GAACCGGCAC CGGAGGAACT GGCACTGGAA 
    CCGGCACTGG GACCGGCACT GGGACCGGCA CCGGAGGAAC TGGCACTGGA 
    ACCGGAACTG GTACCGGTTC AGGTGCTCAG AAATTGGAAG CACAAGGCAA 
    CAGTACAGGA GGTACATCAT GGGACGATGG ATCCGATTAC GATGGCGTGA 
    CCAAGATATA CGCAAGCTAC GGTGGGGAAG GTATTCAATA CGTCAAGTTC 
    GACTATGTGA AAGGTGGAGT AACAAAACAA GGAGTTCTAC ACGGTAAACA 
    ACAAAGTAGA CAAAATCCAA GAGAGTTTGT GATTAACCAT CCGGATGAGT 
    ATCTTGTTTC TGTTGAGGGT TGGTATGAAA CCGTCATGCT AGGAATCCAG 
    TTCAAAACGA ACTTGAACAC TTATGAGGTC AGCATCTATC CTTTCGAACC 
    TAGTACTGAT ACTAAATTTA CTCTTCAAGT TCAAGACAAG AAGATCATTG 
    GATTTCACGG TTTCGCGGGC AACCATGTTA ATTCCATTGG AGCTTACTTC 
    GTTCCAAAAT CCTCCACCAC TCCTGTTCCT TCAACCCCTT TGAAGCTGAC 
    CGCAGAAGGT GGTGAGACAG GAGCTGTATG GGACGATGGT TCTCACGATG 
    ATGTTAAGAA AGTTTATGTA GGACAAGGCC AAGATGGTGT TGCAGCTGTC 
    AAGTTTGAAT ACAAAAATGG TTCTCAGGTT GTTTTTGGAG ATGAACGTGG 
    AACGAGAACA TTGCTAGGAT TCGAAGAGTT CGAGCTTGAA TCAGACGAAT 
    ATATAACATC CGTGGAAGGA TACTACGAAA AAAACTTTGG AGTTGATACT 
    GTAGTGACAA CGCTGATTTT CAAGACTAGC AAGAACAAAA CAGCTGGACC 
    GTTTGGGATT GTATCTGGCA CAAAGTTTGA ATTCAAGAAG GAAGGTTACA 
    AGATCACTGG GTTCCACGGA CGAGCTGGTG AGTATGTTAA TGCTATTGGA 
    GCTTATTTAG CTCCATCAGG CACCACCCCT TTGACTCCTG CAACACAATC 
    CCAAAAGCTA GAAGGAGCTG GTAGTGAGGC AGGAACTTTA TGGGATGATG 
    GTGCTTTCGA CGGTGTAAGG AAAGTGTCTG TAGGACAAGC CCAAGATGGT 
    ATTGGAGCGG TCTCGTTTGT GTACGACAAA GCAGGTCAGG TTGTAGAAGG 
    AAAAGAACAT GGAAAACCCA CATTGCTTGG ATTTGAAGAG TTTGAGCTTG 
    ACTATCCAAG TGAATACATC ACGGCAGTTG ATGGCACCTA CGATGCAATC 
    TTTGGGAATG AACCAATCGT AAATATGCTT AGGTTCACGA CTAATAAGCG 
    AGTATCTATT CCTTTTGGAA TAGGAGCTGG CACAGCCTTC GAATTCAAGA 
    AGGACGGTCA AAAGATAGTT GGTTTCCATG GAAGAGCTGG TGATCTACTT 
    CACAAATTTG GAGTCCATGT CGCGCCAATA ACCAAATAAT TATGGAGATT 
    TTAAGTATCT TTTGATGATA GTTTACACAC TTTGAATAAG CTGATTCTAC 
    TTTATTTCTC TCTGTTTGTT TACTGCTTCA GTGTTTTAAG TCTTCTCTTT 
    GTGTTTGTTG CTGTTGTGTC TTTGATGGAT TTTTGTGATC CGATTTAATA 
    AAAGAAGTGT GTTCAAACTA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G16460.1 [+] show detail - Mannose-binding lectin superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 3.2e-09
    FPrintScan PRICHEXTENSN 3.2e-09
    FPrintScan PRICHEXTENSN 3.2e-09
    FPrintScan PRICHEXTENSN 3.2e-09
    HMMPfam Mannose-binding lectin 2.6e-29
    HMMPfam Mannose-binding lectin 3.8e-41
    HMMPfam Mannose-binding lectin 2.8e-45
    HMMPfam Mannose-binding lectin 2.7e-46
    HMMPanther JASMONATE INDUCIBLE PROTEIN-RELATED 4.7e-38
    HMMPanther KELCH REPEAT DOMAIN 4.7e-38
    superfamily Mannose-binding lectin 5.3e-47
    superfamily Mannose-binding lectin 2.8e-46
    superfamily Mannose-binding lectin 5.6e-40
    superfamily Mannose-binding lectin 1.3e-30
    Gene3D Mannose-binding lectin 4e-25
    Gene3D Mannose-binding lectin 3.5e-33
    Gene3D Mannose-binding lectin 2.6e-42
    Gene3D Mannose-binding lectin 1.1e-41

    See the detailed result >

    AT3G16460.1

    Model type
    Protein coding
    Short Description
    Mannose-binding lectin superfamily protein
    Computational Description
    Mannose-binding lectin superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 154784 Blast hits to 42550 proteins in 2542 species: Archae - 433; Bacteria - 67678; Metazoa - 26922; Fungi - 9328; Plants - 12326; Viruses - 2371; Other Eukaryotes - 35726 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR