F10226

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10226

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F10226

Determination of introduced cDNA(s)

  • RAFL05-16-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-J06 - Resource: pda03025

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-J06 - full reading 
    AGTCTTGTCT TCTATTATGC AAAAGGTCTT CTTGGCCATG GATACTTGTG 
    CTCTAGTAAT CCATCAGTCT CTGTCTCGCA TCAAACTTTC TCCTCCCAAA 
    TCTTCTTCTT CTTCTTCTTC TGCTTTCTCC CCTGAATCCT TACCGATCAG 
    ACGGATCGAG CTGTGTTTCC GAGGAGCTAT ATGTGCCGCC GTACAAAGAA 
    ACTACGAAGA AACGACCTCC TCCGTGGAAG AGGCAGAGGA AGATGATGAG 
    TCATCATCAT CGTACGGAGA AGTGAACAAG ATCATTGGAA GCCGAACGGC 
    GGGGGAAGGA GCCATGGAGT ACCTTATCGA GTGGAAGGAC GGCCATTCTC 
    CGTCGTGGGT TCCATCGAGC TACATCGCAG CAGACGTAGT GTCGGAGTAC 
    GAGACACCCT GGTGGACGGC AGCTAGAAAA GCCGACGAGC AGGCCCTGTC 
    ACAGCTCCTG GAGGACCGAG ACGTCGATGC CGTGGACGAA AACGGCCGGA 
    CGGCTCTGCT TTTCGTGGCA GGTCTGGGGT CGGACAAGTG CGTAAGGCTT 
    CTGGCGGAGG CTGGAGCCGA TCTCGACCAC CGAGACATGA GGGGAGGCTT 
    GACGGCGCTG CACATGGCGG CTGGTTACGT GAGGCCGGAG GTGGTGGAGG 
    CGCTGGTGGA GCTGGGAGCT GATATTGAAG TGGAAGACGA GAGAGGGTTA 
    ACGGCGTTGG AACTAGCGAG GGAGATTCTG AAGACGACGC CGAAGGGGAA 
    TCCGATGCAG TTCGGGAGGA GAATTGGGTT AGAGAAAGTG ATCAATGTCC 
    TGGAAGGACA AGTGTTCGAG TACGCCGAGG TGGATGAGAT CGTAGAGAAA 
    CGAGGGAAAG GCAAAGACGT TGAATATCTG GTCAGATGGA AGGACGGTGG 
    AGATTGCGAG TGGGTGAAAG GTGTACACGT GGCGGAAGAT GTGGCTAAGG 
    ACTACGAGGA TGGGCTGGAG TACGCTGTAG CGGAGAGTGT GATCGGGAAG 
    AGGGTGGGAG ACGATGGGAA GACCATCGAG TATCTTGTCA AATGGACTGA 
    TATGTCTGAT GCCACTTGGG AGCCTCAGGA CAATGTCGAC TCTACTCTTG 
    TTCTACTCTA CCAACAACAA CAACCAATGA ATGAATGATT GATTTTGATG 
    ATTACATTCT TCTCAATTTG CTTCTTTCTC ATATGTGTTG GTTCATCTGA 
    CCGGTTCGGT TGGTACGTAC CGGTACATTT TCATTTTCTT TTAAGATGTG 
    ATCTTGATGG TTTTTGGCCT TTTGGGGACA CTATTTGATT TTATATCCAT 
    GCTTTGAATT TTGCTTCCCT TTTTGGGGAG ATTCATGATC

    Gene models with high sequence identity

    1. AT2G47450.1 [+] show detail - chloroplast signal recognition particle component (CAO)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Chromo domain 10.874
    ProfileScan Ankyrin repeat 10.633
    ProfileScan Ankyrin repeat 12.77
    ProfileScan Ankyrin repeat-containing domain 24.878
    HMMSmart Chromo domain 6.7e-07
    HMMSmart Ankyrin repeat 1500
    HMMSmart Ankyrin repeat 1.8
    HMMSmart Ankyrin repeat 0.0003
    HMMSmart Chromo domain 6.6e-08
    HMMSmart Chromo domain 3.2e-10
    HMMPfam Chromo domain 9.6e-09
    HMMPfam Ankyrin repeat 1.1e-05
    Gene3D Ankyrin repeat-containing domain 3.6e-20
    Gene3D no description 0.00073
    superfamily Ankyrin repeat-containing domain 2.3e-28
    superfamily Chromo domain-like 4e-08
    superfamily Chromo domain-like 7.1e-05
    Coil coiled-coil 0
    HMMPanther ANKYRIN REPEAT DOMAIN PROTEIN 2 (ATAKR2) 8.5e-112
    HMMPanther ANKYRIN REPEAT-CONTAINING 8.5e-112

    See the detailed result >

    AT2G47450.1

    Model type
    Protein coding
    Short Description
    chloroplast signal recognition particle component (CAO)
    Curator Summary
    A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.
    Computational Description
    CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing protein 2 (TAIR:AT4G35450.5); Has 25373 Blast hits to 13489 proteins in 848 species: Archae - 87; Bacteria - 2575; Metazoa - 11620; Fungi - 2006; Plants - 1049; Viruses - 137; Other Eukaryotes - 7899 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR