F10319

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10319

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10319

Determination of introduced cDNA(s)

RAFL09-34-O13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-O13 - Resource: pda06083

full reading [+] show sequence

GTTCCGGTAA GAGCTTTTGC AGCCACTCTT TATAGTTATT TAGAATTGGC 
GATCGAATCA ATCTCACTCC CTCCCTCCCT TAAGTCTTGT TGAATCTGCT 
GAATTGTTTT ATAAAGAGTT ACTTTGGCAA AATGGAAAAT CCGGCGAAGA 
GAGTGTTGAT GACATCCAAC GGCGACGAGG TGTCCCGAAA CATCGCTTTC 
CATCTAGCCA AACACGGTTG CAAGTTGGTA ATGATGGGAA ATGAGGGTTC 
CCTAAGGAGC ATTGTAGACA AGATTAGAGA TTCCATTGAG GGAGCCTTCC 
CTGCCGATGT TATAGCACTC GACATGGAAT CTGACTCTGA AGTTGCTTTT 
CATGCCGCTG TCCAAAAGGC ATGGGAACTT TCCGGCCATT TCGATGCTTT 
TCTCAACTCT TATACCTACC AAGGTTTAAT TTGCTTCTTG TTTTTCACTA 
CCCTGCCTTT GATGCTCTTG TGTGTTGATC ATTCCTTTAT TCAACAATCT 
TTCTTTCTTG CAGGAAAGGT GCAGGACATT CTTCAAGTCT CTCAAGATGA 
GTTCCACAGA ATCACAAAGA TCAATCTCAC CGCTCCATGG TTTCTCTTGA 
AGGCTGTAGC CACAAGGATG AAGGACCATG GATCAGGAGG CTCCATTGTC 
TTCATGGCCA CTATCGCCAG CGGAGAGAGG GCGCTTTACC CTGGCGCTGA 
TGCCTACGCT TCAACTTCTG CCGCTATTCA CCAGCTCGTC CGGGTATGCA 
TCCTAGCTCC TAATTAGACA CATCGCGTTC GTAACTTGAA TATGTTTGTT 
GATGATTGGG TTTCAGGCAT CAGCCATGAG TCTCGGGAAG CACAAGATAC 
GGGTCAACAT GATCTCTAGA GGGCTGCATC TGGATGATGA GTATACAGCT 
TCTGTGGGAA GAGACCGAGC GCAGAAGCTG GTCAAGGACG CTGCACCCCT 
CGGCCAGTGG CTCAACCCGG ACACAGACCT CTACTCCACT GTTATCTACT 
TGATCAGCGA TGGCTCACGC TTCATGACAG GCACCACTGT CTTGGTGGAT 
GGAGCGCAGT CCCTTACGCG ACCCCGTCTC AAATCCTACA TGTGATCAAT 
GCCTAGTATT ATTATAATTC TATGTTGTGT GTAAAAAGTG AATATGAATC 
AAGTTTGAAT AACTATGGAG GGATGAATAA TCCATCC

Gene models with high sequence identity

AT3G01980.2 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	BETA-KETOACYL-ACP REDUCTASE-RELATED	9.6e-35
HMMPanther	Short-chain dehydrogenase/reductase SDR	9.6e-35
HMMPanther	BETA-KETOACYL-ACP REDUCTASE-RELATED	1.4e-78
HMMPanther	Short-chain dehydrogenase/reductase SDR	1.4e-78
Gene3D	NAD(P)-binding domain	6.5e-11
Gene3D	NAD(P)-binding domain	2.6e-11
superfamily	NAD(P)-binding domain	1.5e-13
superfamily	NAD(P)-binding domain	2.3e-15

See the detailed result >

AT3G01980.2

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G46170.1); Has 521 Blast hits to 521 proteins in 203 species: Archae - 4; Bacteria - 319; Metazoa - 7; Fungi - 24; Plants - 123; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link: InterPro Scan - TAIR