F10345

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10345

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10345

Determination of introduced cDNA(s)

  • RAFL02-10-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-H10 - Resource: pda00040

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-10-H10 - full reading
    AGGGTTTTGA AGAGTCTCTC GTCGCCGTTT GTAATTCCTC TGTGAGCAAA 
    TCGACAAAAT GGGTCACTCT AATGTCTGGA ACTCTCATCC GAAGAAGTAC
    GGTCCTGGAT CTCGTTTATG CCGTGTGTGC GGGAACTCAC ACGGGCTTAT
    CAGGAAGTAT GGTTTGAATT GCTGCAGACA GTGTTTCCGC AGTAACGCCA
    AGGAGATCGG ATTCATTAAG TACCGTTAAA GAGGCCTTTG ACTGATGCTT
    ATAATACACA AACATGTTGG TGTTGATGAA TTGGCCTTGA ATCTTTTAAG
    TTGTTGTTGC ATTCTTCTTT AAAGTTTATC TCTTATTTGG AACAATGATC
    TTTTGGTTTT GATTAATATT TTGCTTGTT

    Gene models with high sequence identity

    1. AT3G43980.1 [+] show detail - Ribosomal protein S14p/S29e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S14 5.4e-19
    HMMPanther SUBFAMILY NOT NAMED 1.4e-38
    HMMPanther FAMILY NOT NAMED 1.4e-38

    See the detailed result >

    AT3G43980.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S14p/S29e family protein
    Computational Description
    Ribosomal protein S14p/S29e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: Ribosomal protein S14p/S29e family protein (TAIR:AT4G33865.1); Has 986 Blast hits to 986 proteins in 355 species: Archae - 225; Bacteria - 0; Metazoa - 331; Fungi - 136; Plants - 156; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR