F10504

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10504

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10504

Determination of introduced cDNA(s)

  • RAFL06-76-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-76-D16 - Resource: pda03609

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-76-D16 - full reading 
    TCGCCTATTG TTGCCGTTGC TTGCTATCTT TCGCCGTCGT CTCTTTAGCT 
    TCTTGCGAAG ATGGTTCTTC AAAACGATAT CGATCTGCTT AACCCACCTG 
    CTGAGCTTGA GAAGAGGAAG CACAAGCTCA AGCGTCTTGT CCAGTCTCCC 
    AATTCCTTCT TCATGGATGT GAAGTGCCAA GGCTGCTTCA ACATCACTAC 
    TGTTTTCAGT CACTCGCAGA CTGTTGTGGT GTGCGGAAAC TGCCAGACAA 
    TTCTGTGCCA GCCTACAGGA GGAAAGGCAA AGCTCACCGA AGGATGCTCT 
    TTCAGGAGAA AGGGTGATTG ATTGAAGCAA TCATCAAAAT AATGAAGGCT 
    GTTTTCTTTT TCTTTTTTTT TTGTTGTTGT TGGCTATGAT GTTATCTCTG 
    GAATTTTAAA ATGTTTGGAT TTTTAATATA AGTAAGCAGA GTTTGCTCTT 
    TTACTTTTGG

    Gene models with high sequence identity

    1. AT3G61110.1 [+] show detail - ribosomal protein S27
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Ribosomal protein S27e 4e-16
    HMMPanther Ribosomal protein S27e 3.7e-56
    PatternScan Ribosomal protein S27e 0
    HMMPfam Ribosomal protein S27e 7.4e-28
    superfamily Ribosomal protein, zinc-binding domain 9e-22

    See the detailed result >

    AT3G61110.1

    Model type
    Protein coding
    Short Description
    ribosomal protein S27
    Curator Summary
    Arabidopsis ribosomal protein
    Computational Description
    ribosomal protein S27 (RS27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT2G45710.1); Has 1035 Blast hits to 1035 proteins in 379 species: Archae - 136; Bacteria - 0; Metazoa - 447; Fungi - 151; Plants - 149; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR