F10511

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10511

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F10511

Determination of introduced cDNA(s)

  • RAFL06-10-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-E14 - Resource: pdz87577

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-10-E14 - 5 prime EST 
    GGTTCTCATC ATCGTNTTAA AGAAGGAATT CGATTTTTCG CCTGAACCTG 
    CGGATTTTTC GATTCTTCAA ATTCAATGTC TTATGCTTAT CTCTTCAAGT 
    ATATCATCAT CGGGGATACT GGAGTGGGGA AATCATGTCT TCTGCTTCAG 
    TTCACCGACN AGAGGTTTNA GCCGGTGCAT GACCTTACCA TTGGTGTTGA 
    ATTTGGGGCT AGGATGATCA C

    Gene models with high sequence identity

    1. AT4G17170.1 [+] show detail - RAB GTPase homolog B1C
      E-value: 3e-114; Score: 98.18

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-10-E14 - 3 prime EST 
    ACGCAAACAC ATCTTAATTT TTAGATATAT GAATAGGCAT ACACCGTGTA 
    TTGTCAAACC GTTCCAAAAC CAACCACAAC ACAGTCACCA AATCGAATTC 
    CAAAACGATT TACAAC

    Gene models with high sequence identity

    1. AT4G17170.1 [+] show detail - RAB GTPase homolog B1C
      E-value: 2e-55; Score: 99.14

    AT4G17170.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog B1C
    Curator Summary
    member of RAB gene family
    Computational Description
    RAB GTPase homolog B1C (RABB1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ER to Golgi vesicle-mediated transport, pollen sperm cell differentiation, cell growth; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: GTP-binding 2 (TAIR:AT4G35860.1); Has 27116 Blast hits to 27043 proteins in 734 species: Archae - 17; Bacteria - 131; Metazoa - 14131; Fungi - 4055; Plants - 2966; Viruses - 20; Other Eukaryotes - 5796 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR