F10843

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10843

Determination of introduced cDNA(s)

  • RAFL09-20-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-L05 - Resource: pda05586

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-L05 - full reading 
    CGGTGCACAT TAGCCCCAAC CAATCAAAAT CATATATCCC GTTCTCCGGC 
    GACTCTTCGT CGTGAGCTTC CGTCATGGCC ACATGGAACG CATCCTCCCC 
    TGCGGCGTCT CCTTGCTCAT CGAGGCGACG AACGAAAGCT CCAGCGAGAC 
    GCCCTTCCTC CGAATCTCCA CCACCGAGGA AGATGAAATC AATGGCTGAG 
    ATAATGGCGA AATCTGTCCC TGTGGTTGAA CAAGAAGAAG AAGAAGACGA 
    AGACAGCTAC AGTAACGTCA CCTGCGAGAA ATGTGGTTCT GGAGAAGGAG 
    ACGATGAGCT TCTTCTCTGT GACAAATGCG ATAGAGGCTT TCACATGAAA 
    TGCCTTAGAC CCATTGTTGT TCGTGTCCCC ATTGGAACTT GGCTTTGTGT 
    CGATTGTTCC GACCAACGAC CTGTAAGAAA AGAAACTAGA AAGCGGAGAC 
    GATCTTGCTC TTTGACAGTG AAGAAAAGAA GGAGAAAACT CTTACCTTTG 
    GTTCCATCAG AAGATCCTGA TCAGAGGCTT GCACAAATGG GAACACTTGC 
    TTCTGCATTA ACGGCATTGG GTATCAAATA CAGCGATGGT TTAAATTATG 
    TTCCCGGAAT GGCTCCTCGG TCTGCAAATC AATCCAAGTT AGAGAAAGGT 
    GGGATGCAGG TGCTATGCAA AGAAGATTTA GAGACATTGG AACAATGTCA 
    ATCTATGTAT AGACGAGGAG AATGCCCTCC TCTCGTTGTG GTATTTGATC 
    CGCTTGAAGG TTACACAGTT GAAGCAGATG GTCCTATTAA GGACTTAACA 
    TTCATAGCTG AATATACAGG GGATGTTGAT TACTTGAAAA ACCGAGAAAA 
    AGACGATTGT GACAGCATCA TGACTCTCCT TTTATCAGAA GATCCTTCAA 
    AGACTCTTGT TATCTGTCCA GACAAGTTTG GAAACATATC TCGCTTCATT 
    AATGGCATTA ACAATCACAA TCCGGTTGCT AAGAAGAAGC AGAACTGCAA 
    ATGCGTGAGG TATAGCATAA ACGGCGAATG TCGAGTTCTT CTAGTGGCTA 
    CACGCGATAT ATCGAAAGGG GAAAGGCTCT ATTATGACTA CAATGGTTAT 
    GAACATGAGT ATCCTACTCA TCACTTCCTC TGATCTTTCA ATTCTAACAG 
    TTCTACAGAG TCTCTAGATC AGATGTTCTT TTTGTTGCCA TATTACAGGT 
    CAATTATAAA TGTAGGGCTG CTGAATATAT GGCCTTTAAT TATGAAGTTA 
    GCGGTAGAAT AATTGGATTT GGAATGACAT TACAGAGATT AAGATGTGGC 
    AAATGTCAAT TGCTGAACTT TTGTTTGATA TCAAATGAAA TCCTAACCTT 
    TTTCTTATAC

    Gene models with high sequence identity

    1. AT5G09790.1 [+] show detail - ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, PHD-type 4.3e-11
    HMMSmart SET domain 0.00042
    Gene3D no description 2.1e-14
    superfamily SET domain 4e-26
    superfamily Zinc finger, FYVE/PHD-type 2.3e-14
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMPfam Zinc finger, PHD-finger 4e-10
    HMMPfam SET domain 2e-06
    HMMPanther MYST-RELATED 1.5e-230
    HMMPanther MYST-RELATED PROTEINS 1.5e-230
    ProfileScan Zinc finger, PHD-finger 10.131
    ProfileScan SET domain 14.412

    See the detailed result >

    AT5G09790.1

    Model type
    Protein coding
    Short Description
    ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
    Curator Summary
    Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
    Computational Description
    ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (ATXR5); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (TAIR:AT5G24330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR