F11025

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11025

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11025

Determination of introduced cDNA(s)

  • RAFL05-12-M08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-M08 - Resource: pda17065

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-M08 - full reading 
    GATCTCATCT CGGTGATGGC GGTGATCTCA TCGTTATTAT TCCCTCCGGT 
    GTTAACCCGA CGAACAATCA CGATCTGCTC CAACTCATCG AAATCAATGG 
    CGGCTAAAAA ACAAATCGGT GAAGAAACCT CGAAGCGGGT CTTTGTATGC 
    GGCGGTGGAG TAATCGGCGT CTGTACTGCT TATTTCCTCG CCAAGAAAGG 
    AATCGCCGTC ACTCTCGTCG AGAAATCAGC CGTCGCGTGC GCTGCTTCCG 
    GTAAAGCCGG TGGATTTCTC GCTTTCGATT GGTGCGATGG AAGTCCTGTT 
    GCGCATTTAG CACGCGCGAG CTTTAAACTC CATCGATCGC TCGCTGAGGA 
    GCTAAACGGT GTCGAATCGT ACGGATACAG AGCACTCACG ACTCTTAGCG 
    TCACCGTGAC GGAATCAAAA CCCGGTTCCG GCGGTTTGGG ATTACCGGAT 
    TGGGTCAACG GCCCAGCTAA AAGCACATCA ACGATTGGTA CAACTCAAAC 
    AACAGCACAA GTGCATCCTC AACTTTTTAC TCGGAAGCTT TTATCGACGG 
    CGAGAGAGAA GTACGGTGTT GAGGTTGTGA TCGGGAAATT AGAAGAGGTG 
    AGAGTGGAAT CAGGTAGAGT TAACTCTGTA GTGCTTGAAG GTGGGAGAGT 
    TATAGACACT GACGTGGTGG TTCTGGCGAT GGGTCCATGG TCGAGTAAAT 
    TTGAGCTGTT GTCTTCGATT TTTAGGGTTT ATTGTACTAA AGCTCATAGC 
    ATTGTCTTGG AACCGAAGGA ACCAAATGCT ATAACACCTC ATGCCCTGTT 
    CTTAACTTAT CGTCCTGCTC ATGGTGGTGA AGCTTTGGAC CCTGAAGTAT 
    ACCCTCGTCC CACAGGTGAA GTGTACATAT GTGGAATGTC ATCACAAGAA 
    GAGGTACCTG ATGATGCTGA TCAGGTCACA AGCAATCCTG AATCGATCCA 
    GGTTCTCAAG AGAGTTGCGA AAACAGTCTC GAGCTATCTA AACGAAGAAA 
    ACGCTCTAGT GAAAGCAGAG CAAGCTTGTT TCTTGCCCAG CACAGAAGAT 
    GGAGTTCCTG TGATCGGAGA GATTCCAGGA ATCAAGGGAT GTTATGTAGG 
    CACAGGGCAT AGTTGTTGGG GGATTCTTAA TGGTCCAGCC ACTGGTGCTG 
    CTTTGGCTGA GCTTATTGTA GACGGTGTAG CCACAAGTGT TGATCTTAGC 
    CGGTTTAGTC CTTCCCGGTT TAGCAAACGA AGATGAAGAG TATAGTAATA 
    TAGAGTGTTC GTTGAGATAT CACATAAAAG CTACTCTGTT CTTTGAAGTC 
    TAAGCAAACA GAATTGTGAA CGAGGAATCT TAAAATGTGA TAATGTGATA 
    CGTGATTGTA TTTTGAAAAA AAAAA

    Gene models with high sequence identity

    1. AT5G67290.1 [+] show detail - FAD-dependent oxidoreductase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam FAD dependent oxidoreductase 7.1e-62
    Gene3D no description 7.9e-37
    HMMPanther FAD OXIDOREDUCTASE 1.1e-193
    HMMPanther FAD NAD BINDING OXIDOREDUCTASES 1.1e-193
    superfamily Nucleotide-binding domain 7.3e-38

    See the detailed result >

    AT5G67290.1

    Model type
    Protein coding
    Short Description
    FAD-dependent oxidoreductase family protein
    Computational Description
    FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR