F11144

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11144

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11144

Determination of introduced cDNA(s)

  • RAFL06-13-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-E15 - Resource: pda03142

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-13-E15 - full reading 
    GGTGAAGCCA AAGGCATCGT GAGCAAAATC CGCAGTTTTC TACATTAATG 
    GATTGTTTCT GTTCTAGAGC TTCTCTTCCG TCTCTGTGAT TTCTGGGTAG 
    ATTCTAGGAT TTCTATTTGC ATCTCTAACC TGAGAGCTGC TAATAGTCCA 
    CACAACTTTT TAGTTTGTGA GTTTTCCTAA TTTAGGGTTA GGACAAATTT 
    CTGTATTTTT CATCCAAGGG GATAAAGATG TATGCTGATA AATTGGAGGC 
    TGAGTCTGGA AGCAGGAAGG TCGTTAAGGA TCGTATCAAT GGCGGTTCTG 
    GAGACATCTC TACTCGCGTG CGACAAGTGA CTGGGAAGAG GCAAAGGCAG 
    GACGACAAAT GGGAGCATGA TCTTTTCAGT AGTGACAAAC CTCAACTTTC 
    AAATCGCAGG GTTGATCCTA GAGATCTTCG TTTGAAGCTC CAAAAGAGAC 
    ATCATGGGTC TCAAAGTGGG CGAGAAGCTG GTTCAGGCGT GCGGGATTTA 
    CGGGATCAGC TCTCTGGGAC AATGAATCAG CAACCAAAAA ACAGTGACCC 
    ACCAAAATCC AAAGCGGAGG CTGCTAGGCC AAGTATGAAG AGCGTAGCGA 
    CTGAAACAGA GACTAGAAAA ACTTCCAGTC AAGCTACCAG GAAGAAATCA 
    CAGCAGGCTG ATTCATCGGT TGATAGCTTT CTTGAATCAT TGGGTCTCGA 
    GAAATATTCA ACAGCGTTTC AAGTGGAAGA AGTTGATATG GATGCTCTCA 
    TGCATATGAC AGATGATGAC CTCAAGGCTA TGCTCATACC GATGGGTCCG 
    AGGAAGAAGA TACTTCTTGC TTTGGGATCT AAACCCTAAG AGCTTAGTGC 
    CATCTACCTG ATGGTTGGAA GCTCAGGTGA ATGGTCTCTG GAGTTGTTAC 
    ATTAAGAATT GTCAGAAATG AATTGGCTCT TTTTCTCTTG ATTGTATTTT 
    GCCCATTTTA AGAGCTTAGA ATTTGGTTAG ACATCTGTAA TCGTAAACAT 
    GGTGAAACAT ACACTGTTTG ATTGCACCAC TTTTGATGTG AGAGAAGCCT 
    TAAGATAAAC ACAACAACG

    Gene models with high sequence identity

    1. AT3G07170.1 [+] show detail - Sterile alpha motif (SAM) domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Sterile alpha motif 6.6e-06
    HMMPfam Sterile alpha motif, type 1 6.6e-16
    ProfileScan Sterile alpha motif 9.816
    superfamily Sterile alpha motif homology 4.7e-12
    HMMPanther KIAA0725 2.2e-07
    HMMPanther SEC-23 INTERACTING PROTEIN P125 2.2e-07

    See the detailed result >

    AT3G07170.1

    Model type
    Protein coding
    Short Description
    Sterile alpha motif (SAM) domain-containing protein
    Computational Description
    Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT5G48680.1); Has 516 Blast hits to 515 proteins in 77 species: Archae - 0; Bacteria - 10; Metazoa - 341; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR