F11707

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11707

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F11707

Determination of introduced cDNA(s)

  • RAFL09-13-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-13-F05 - Resource: pda05429

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-13-F05 - full reading
    AGCCGTCACC TCCTACCTCA GACTCTATTA CTCCGGCCGG CGAAATTAGG 
    GTTAGAATCT GTAGCTGTTT GGTGAGATAA GAATAATAAA TGGGTCGTTT
    CAAAAACAAT AAGAAGAGTA GGGTCATTGG GAAACCTATT GCGAAGAAAA
    ATCAAGAGGA TGTTAGTCAT GTCACTGGGG ATAAGATTCC CAAGAGTTTT
    GTCTTCTCAA GAATGAAACT TGCTGGCCCT GTTAAACAAC TCCAGATGGA
    TTTGAGGAAG CTCATGCTTC CCTACACTGC TCTCAGTCTT AAGGAGAAGA
    AGCGGAACAC TTTAAGGGAC TTTTTGAATG TATCAGGTCC AATGGGTGTT
    ACACATTTCC TTATGCTTTC GAAAACAGCG TCTTCACTGT CTCTTAGAGT
    AGCAAGAACC CCTCAGGGCC CGACTCTTAC CTTCAAAATT CATCAGTATT
    CCTTAGCATC AGATATAGCT CAGTCTCAGC TTCGACCTAG ATGTCCTCAA
    GATCTTTTCA AGAGTCCTCC TTTGATTGTC CTTTCTGGAT TCGGTTCTCA
    AGAGTTGCAT CTGAAACTGG CAACGATTAT GTTTCAGAAT ATATTCCCAG
    CTATTGATAT TAACACTGTC AAGCTCTCCA CCTGCCAGAG ATTAGTACTC
    TTGAACTACA ACAAAGACAC CAAGCTCATT GATTTCCGGC ATTATTCTAT
    AAGACTTCAG CCTGTTGGAG TATCTCGTAG GATCAGAAAG TTTGTGCAAA
    ATCATCAGGT TCCAGATCTT AGGAATCTGC AGGATGTTAG TGATTTTGTC
    ACCAAGGCTG GTTACGGATC AGAGAGCGAA GGAGATGAAG AAGCGGCAAC
    AGTGACACTA TCATCTGATC TAGGCCGAGT TAACAAAGGT GCCACCAAGA
    GCGCAGTGAA ACTGCAAGAA ATTGGACCAA GAATGACTAT GCAACTCGTT
    AAAGTGGAGG AAGGATTGTG TACAGGAGGA ATCATATTCA GTGAATATGA
    TGTTGATGGA AAGAAAGAAA AGTTAAAGAA GAAACAGGAT GAAGAAGAAG
    AAGAAGATAG TGAAGAAGAA GGCGAAGAGG GTAGTGAAGA AGATGGGGAA
    GACATGGATG AGGATTTTGA AGATTGAAAA GAGTTAAAAT AGAGTAACAC
    TGTTTTCACA TGAGACTTGA GTGTTGTTCA TCAAATTTTG TTCCTTGGAT
    CTCTGAGTAG CGTTGCATCT ATTGTCTGAT TAAACTACAA TTACAAAGCC
    TTTTGTACTA TTAAACTAAA TGTCTTCCCG GAATTCGTAT AATGACCGAA
    TTAAGTC

    Gene models with high sequence identity

    1. AT5G61770.1 [+] show detail - PETER PAN-like protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Brix domain 3e-51
    ProfileScan Brix domain 32.917
    HMMPanther PETER PAN-RELATED 5.2e-152
    HMMPanther PETER PAN-RELATED 5.2e-152
    Coil coiled-coil 0
    HMMSmart Brix domain 3.1e-68

    See the detailed result >

    AT5G61770.1

    Model type
    Protein coding
    Short Description
    PETER PAN-like protein
    Computational Description
    PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 946 Blast hits to 859 proteins in 217 species: Archae - 0; Bacteria - 10; Metazoa - 449; Fungi - 173; Plants - 58; Viruses - 18; Other Eukaryotes - 238 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR