F11711

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11711

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F11711

Determination of introduced cDNA(s)

  • RAFL06-12-D06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-D06 - Resource: pda03097

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-D06 - full reading 
    ATTATCCAAT CCAATCCATT ACTTACTAAG TAAAAAGAGA AAAAAAAAAA 
    AATTAAGATA TGGAGGGACT CTTGAAGTTG TCAACTTTGG TGATTGTGTG 
    CATGTTAGTG ACCGCTCCAA TGGCGTCCGA GGCAGCAATC TCGTGCGGCG 
    CAGTCACCGG CAGCTTAGGT CAATGCTATA ACTACTTGAC CCGAGGCGGT 
    TTCATTCCTA GAGGGTGTTG CTCTGGCGTT CAGAGGCTCA ACAGCTTGGC 
    TCGTACCACC CGTGACCGCC AACAAGCTTG TCGTTGTATC CAGGGAGCAG 
    CGAGAGCCTT GGGTTCTCGA CTTAACGCTG GTCGTGCTGC TCGTCTCCCT 
    GGTGCTTGCC GTGTTAGGAT CTCTTACCCC ATCAGTGCCA GAACCAACTG 
    TAACACCGTC AGGTGATCAA AAGAAGATAG ACGTTGAAGG GTTTTCATAT 
    AATCGATGAG AGAGTATTAA AAATAATTAA GATGTCACAC TATATACACA 
    CTAGTGTATC CTTTTACTGT TATTATTGTT GTGTTTCTAG ATTTTGTGTT 
    TTCATGTCTT TCTTTGTATA TGACGGTCCA TTTAATTGGT CGTCTGTGTT 
    ATGTACTCCT CTAATGATAT ATTGAATTTA CGATTATGTA TTATCTTCAA 
    ACTCTTGCCA TTAAG

    Gene models with high sequence identity

    1. AT3G51600.1 [+] show detail - lipid transfer protein 5
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Plant lipid transfer protein/Par allergen 1.7e-23
    FPrintScan Plant lipid transfer protein/Par allergen 1.7e-23
    FPrintScan Plant lipid transfer protein/Par allergen 1.7e-23
    FPrintScan Plant lipid transfer protein/Par allergen 1.7e-23
    FPrintScan Plant lipid transfer protein/Par allergen 1.7e-23
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 3.3e-11
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 8e-28
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 1.2e-27
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 4.3e-07
    PatternScan Plant lipid transfer protein/Par allergen 0

    See the detailed result >

    AT3G51600.1

    Model type
    Protein coding
    Short Description
    lipid transfer protein 5
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
    Computational Description
    lipid transfer protein 5 (LTP5); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 1 (TAIR:AT2G38540.1); Has 1074 Blast hits to 1073 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1070; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR