F11824

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11824

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11824

Determination of introduced cDNA(s)

  • RAFL05-17-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-E01 - Resource: pda07381

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-E01 - full reading
    ACACAACCAA AGCGTTTAGA AAAAAACAGC GATAAAACCG AAACATCAAG 
    CAAACAAAAA AAAAAGAGAA GAGAAATTAT TTTTTTTTGT TTTCGTTTTC
    AAAAACAAAA TCTTTGAATT TTATGGCAAC CCGTCTTCTC CGAACAAACT
    TTATCCGGCG ATCTTACCGT TTACCCGCTT TTAGCCCGGT GGGTCCTCCC
    ACCGTGACTG CTTCCACCGC CGTCGTCCCG GAGATTCTCT CCTTTGGACA
    ACAAGCACCG GAACCACCTC TTCACCACCC AAAACCCACC GAGCAATCTC
    ACGATGGTCT CGATCTCTCC GATCAAGCCC GTCTTTTCTC CTCTATCCCA
    ACCTCTGATC TCCTCCGTTC CACCGCCGTG TTGCATGCGG CGGCGATAGG
    TCCTATGGTC GACCTAGGGA CGTGGGTCAT GAGCTCTAAA CTTATGGACG
    CTTCGGTGAC GCGTGGCATG GTTTTAGGGC TTGTGAAAAG TACGTTTTAT
    GACCATTTTT GCGCCGGTGA AGATGCCGAC GCAGCCGCTG AGCGCGTGAG
    AAGCGTTTAT GAAGCTACTG GTCTTAAAGG GATGCTTGTC TATGGCGTCG
    AACACGCCGA TGACGCTGTA TCTTGTGATG ATAACATGCA ACAATTCATT
    CGAACCATTG AAGCTGCCAA ATCTTTACCA ACATCTCACT TTAGCTCAGT
    GGTTGTGAAG ATAACTGCCA TTTGTCCAAT TAGTCTTCTG AAACGAGTGA
    GCGATCTGCT GCGGTGGGAA TACAAAAGTC CGAACTTCAA ACTCTCATGG
    AAGCTCAAAT CGTTTCCGGT TTTCTCCGAA TCGAGTCCTC TCTACCACAC
    AAACTCAGAA CCGGAACCGT TAACCGCGGA AGAAGAAAGG GAGCTCGAAG
    CAGCTCATGG AAGGATTCAA GAAATCTGTA GGAAATGCCA AGAGTCCAAT
    GTACCATTGT TGATTGATGC GGAAGACACA ATCCTCCAAC CCGCGATCGA
    TTACATGGCT TATTCATCGG CGATCATGTT CAATGCTGAC AAAGACCGAC
    CAATCGTTTA CAACACGATT CAGGCGTACT TGAGAGACGC CGGTGAGAGA
    CTGCATTTGG CAGTACAAAA TGCTGAGAAA GAGAATGTTC CTATGGGGTT
    CAAGTTGGTG AGAGGGGCTT ACATGTCTAG CGAAGCTAGC TTGGCGGATT
    CCCTGGGTTG CAAGTCGCCA GTCCACGACA CAATTCAGGA TACTCACTCT
    TGTTACAATG ATTGTATGAC ATTCCTGATG GAGAAAGCAT CAAACGGTTC
    TGGTTTCGGT GTCGCTCTCG CAACACATAA CGCTGATTCG GGGAGACTTG
    CGTCGAGGAA AGCGAGTGAC CTCGGGATCG ATAAACAGAA CGGGAAGATA
    GAGTTTGCAC AGCTATATGG TATGTCAGAT GCATTGTCCT TCGGGTTAAA
    GAGAGCAGGG TTCAATGTTA GCAAGTACAT GCCGTTTGGA CCCGTCGCAA
    CCGCTATACC GTATCTTCTC CGACGCGCTT ATGAGAACCG GGGAATGATG
    GCCACCGGAG CTCATGACCG TCAACTCATG AGGATGGAAC TTAAGAGGAG
    ATTAATCGCC GGGATTGCGT AAAGAGAGAG TATGGAGCCA TTAAATGAAA
    TTGGGAAATG TAGATGAATA AATTTCTTCT ATGTAGTTTA AGAAATTGAA
    AACAAAAAAT TATAATATAA GAAATGGAGT AGGTAAGAAC ATTTCCTGTG
    GCTAAATATT TTTCATGAGG GACTATGTTT TTACTATCAA TATATCATTC
    ACAAATGTAT ATTCACCTTA TCAATAAAAA TGCTTTTTAC G

    Gene models with high sequence identity

    1. AT3G30775.1 [+] show detail - Methylenetetrahydrofolate reductase family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Proline dehydrogenase 1.6e-108
    Gene3D no description 6.2e-59
    HMMPanther Proline oxidase 1.6e-130
    superfamily FAD-linked oxidoreductase 2.3e-81

    See the detailed result >

    AT3G30775.1

    Model type
    Protein coding
    Short Description
    Methylenetetrahydrofolate reductase family protein
    Curator Summary
    Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 5 (ERD5); CONTAINS InterPro DOMAIN/s: Proline dehydrogenase (InterPro:IPR002872), Proline oxidase (InterPro:IPR015659); BEST Arabidopsis thaliana protein match is: Methylenetetrahydrofolate reductase family protein (TAIR:AT5G38710.1); Has 2269 Blast hits to 2250 proteins in 878 species: Archae - 1; Bacteria - 1355; Metazoa - 205; Fungi - 217; Plants - 85; Viruses - 2; Other Eukaryotes - 404 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR